| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1114 |
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| Symbol | |
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| ID | 6288776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1188243 |
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| End bp | 1190027 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642624687 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001898694 |
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| Protein GI | 187928207 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.692137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCCG ACGCCGACGC TCAGCCGCCG CGACAAGACG GCGGTGATGG GACTGAGGCC
ACCCCTCGCC GCAAGGGATT GCGCCGAGGC TTGCGCAACC TCGTGGCTTC GCGCCGCCAG
CAGCAGGATG GTCGCCCTGA GGGCGAAGCC GCCGATGCGG GTGGTGCAGA CGCCGGCCAG
CCCGCGCAAC CGCGCAAGAC CCGCGCGCCA CGGGCGCGCA AGCCGAAAGA GGCGGCTGGT
GAGCCGGCGG TAGTTGCTGC AGAAGGTGCT GCGACGGCCG AACAGGCGCC AGCAGAAAAC
CAGGGCGAGA GACGTGGCCC GCGCGGCCGT TTCGGTAAGA ACCGCCGCCG TCAAGGCGAA
GGTCAGCCGC TGGAGCGCGC CGAGCGCAAC GACCGTGTGG AAGGTGCTGG CGGTAAGAAC
ACCGGGGGTC GTGGCAAGTC GCAGAACCGC AACGGCAAAC CGCAAGGCAA GGCAGGCGGC
GCGAACCAGA ATCGCGGGGG CAAGGGGCTG AAGGGAGGCA AGGGCTCTGA AGACGTCTTC
CAATACGTGA TTTCCGGGGC GTACGACTCC GAGGCTGACA CCGGCGGTGC ATCGCAGCCT
CCCAAGGCGC GCGAACTGAC CTCCGAAGAC GACGCTCCCA AACTGCACAA AATCCTGGCT
GATGCCGGGC TTGGCTCTCG CCGCGACATG GAAGACCTGA TCCTGCAAGG GCGCGTCTCC
GTGAATGGCC TGCCGGCTCA TATCGGTCAA CGCATTCTCG CGACCGACCA GGTGCGCGTG
AACGGCAAGC TGATCCAGCG CAAGTTGCCG AACAAGCCGC CGCGCGTGCT GCTGTATCAC
AAGCCGTCGG GTGAAATCGT CAGCCAGTCC GATCCGGAAG GTCGTCCGAC GGTGTTCGAC
GCGTTGCCGC GCATGAAGAC CGGCAAGTGG GTCGCCGTCG GCCGCCTCGA CTTCAATACC
GAGGGCCTGC TGATTTTCAC GACCTCCGGC GATATCGCCA ACCGGTTCAT GCACCCGCGC
TATGGTGTTG AGCGTGAATA CGCGGTGCGT ACGCTGGGTG AGCTGGCCGA AACTGACCGT
CAGAAGCTGT TGCACGGCAT CTCGCTCCAG GACGGCGAAG CCAACTTCCT GCGCTGCGTC
GATGGCGGCG GCGAAGGTGT CAACCACTGG TACCACGTCG CCCTGACCGA GGGGCGGAAC
CGCGAAGTGC GGCGCATGTT TGAGGCGGTC AACCTGACCG TGTCGCGGCT GATCCGGACG
CGCTATGGCA GCTTCGTACT GCCGCGCGGC CTTAAGCGGG GCCGTTGGCA GGAGGTGTCG
GCCGAGGATG TGCGTACGCT GATGGGCACG CTGGGCATGA AGGTGCCGAC GGCGAGTTCT
GGCGGTGGGC AAGACCGCCA GGGCAATCGT CGCCGTGGTC CGGCGCCGGT GCTGATGGGG
CCGATGTCCT CTGGTTTTGC GGGGGAAGCC AACTTCCAGT CGCGTGGTAT GGGCGTTGAA
AACGGTAATC GCGCGCAACC CGCGCAGCGC CGTCCGTCCA GCCCGCGTCA GCCGGATCCG
ATGCAGACGT CCATGGGCTA CATCAATGTG GGAGGCCCGA CCACGCTCAC AGCGCGAACT
CGTATGGGCG ATCGTGCGAA CGGCCGTGGC GGTGCGGGGG CGGGTGGTGG CATGCGTGAT
GGCAATCGCG CACCCGGCAA CAAGCGCCCC GGAAAGAGCG CTGGCGGCAT GCCGAACGGC
AACAAGGCGC CACGCGGTGG TGGCAAACGC GGCGGTAAGC GTTAA
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| Protein sequence | MPADADAQPP RQDGGDGTEA TPRRKGLRRG LRNLVASRRQ QQDGRPEGEA ADAGGADAGQ
PAQPRKTRAP RARKPKEAAG EPAVVAAEGA ATAEQAPAEN QGERRGPRGR FGKNRRRQGE
GQPLERAERN DRVEGAGGKN TGGRGKSQNR NGKPQGKAGG ANQNRGGKGL KGGKGSEDVF
QYVISGAYDS EADTGGASQP PKARELTSED DAPKLHKILA DAGLGSRRDM EDLILQGRVS
VNGLPAHIGQ RILATDQVRV NGKLIQRKLP NKPPRVLLYH KPSGEIVSQS DPEGRPTVFD
ALPRMKTGKW VAVGRLDFNT EGLLIFTTSG DIANRFMHPR YGVEREYAVR TLGELAETDR
QKLLHGISLQ DGEANFLRCV DGGGEGVNHW YHVALTEGRN REVRRMFEAV NLTVSRLIRT
RYGSFVLPRG LKRGRWQEVS AEDVRTLMGT LGMKVPTASS GGGQDRQGNR RRGPAPVLMG
PMSSGFAGEA NFQSRGMGVE NGNRAQPAQR RPSSPRQPDP MQTSMGYINV GGPTTLTART
RMGDRANGRG GAGAGGGMRD GNRAPGNKRP GKSAGGMPNG NKAPRGGGKR GGKR
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