| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1006 |
|---|
| Symbol | |
|---|
| ID | 6288085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1063146 |
|---|
| End bp | 1063727 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642624574 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase cyclophilin type |
|---|
| Protein accession | YP_001898586 |
|---|
| Protein GI | 187928099 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.137538 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0811697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGTA TTCGCTCCCT CTTTGCCGGG CTCGTGTGTG CACTGGCCGT AACCGCCACC
GCAGCCACGG CAGCCACCGC GTCCGCGCCG CGCATCCAGT TCAAGACATC GATGGGTAAC
TTCACCGTTG AGGTGTATCC GGACAAGGCG CCCAAGACGG TCGCCAACTT CCTGCAGTAC
GTGAAGGACG GCTTCTACAA GGGCACGATT TTCCACCGCG TGATGGACGG CTTCATGATC
CAGGGCGGCG GCTTCACGCC CGACATGAAA CAGAAGGACA CGCGCCCGCC GGTCGAGATC
GAATCGAAGA ACGGCCTGAA GAACGACAAG TACACGATCG CCATGGCACG CACCATGGAC
CCGAACTCCG CCACGGCGCA GTTCTATGTG AACGTGGTCG ACAACAACAT GCTGAACTAC
CCTGGTCAGG ACGGTTACGG CTATACCGTC TTCGGCAAGG TGGTTGACGG CACTGACACC
ATCGACAAGA TAAAGGCGGT GGAAACCACC ACCAAGTTCC CGCACCAGAA CGTGCCCGTG
AAGCCGATCG TGATTGAATC GGCCACCGTC GTCTCCAAGT AA
|
|---|
| Protein sequence | MLRIRSLFAG LVCALAVTAT AATAATASAP RIQFKTSMGN FTVEVYPDKA PKTVANFLQY
VKDGFYKGTI FHRVMDGFMI QGGGFTPDMK QKDTRPPVEI ESKNGLKNDK YTIAMARTMD
PNSATAQFYV NVVDNNMLNY PGQDGYGYTV FGKVVDGTDT IDKIKAVETT TKFPHQNVPV
KPIVIESATV VSK
|
|---|
| |