| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0842 |
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| Symbol | |
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| ID | 6288661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 892409 |
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| End bp | 895564 |
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| Gene Length | 3156 bp |
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| Protein Length | 1051 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642624406 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_001898424 |
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| Protein GI | 187927937 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.823151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCT TCTTTATCGA CCGCCCGGTC TTTGCCTGGG TGATTGCGCT GGCCATCATC
CTGGCCGGCG TGCTCGCGCT GCCCAAGCTG CCGGTGGCGC AGTACCCGAA CATCGCGCCG
CCCAACGTCA GCATCTCGGC CAACTATCCG GGCGCGTCTG CGCGCACGGT GGAGAGCGCC
GTCACCGCCA TCATCGAGCG CGAGATGAAC GGTGCGCCGG GGCTGCTGTA CATGTCGTCG
TCGTCCGATG CCGCGGGCAA CGTGTCGATC AACCTGTCGT TCACGCAGGG CACGAGCCCC
GATCTTGCGG CGGTGGAAGT GCAGAACCGC CTGAAGATCG TCGAGGAACG CCTGCCCGAG
GTCGTGCGCC GCAACGGCAT CCGCATCGAG AAGGCGGCCG AGAACTACAT GATGTATTTG
TCGCTGACGG CCGAGCGCGG CCGCTTTGAC GGCATCGACC TGGGCGACCT CGCTTCGTCG
GATTTGATTC CGCAGTTGCG CCGCGTGCCG GGCGTTGGCA CCGCGCAGTT GTTCGATGCG
GAATACGCCA TGCGCATCTG GCCCGATGCC GACAAGCTGA CCGCATTGGG CCTGACCGCC
GGCGACCTGA GCGACGCCGT GCGCCGCTAC AACGCACGCA TCACCGTGGG CGAAATCGGC
AGCGGCGCCG TGCCGGGCAA CGCACCCATC AACGCGAGCG TCACCGGTGA CGATGGGCTC
ACCACGCCCG ATGCATTCGG CCAGATCCCG CTGCGTGCGG GCGCGCAGGG CCGCATGGTG
CTGCTGCGCG ATGTGGCGCG CGTGGAGCTG GGCGGCAGCG ATTACCTGTA CCTCTCGCGC
ATGAACGGCA AGCCGGCTAC GACCATCGGC ATCAAACTTG CCCCTGGCGC CAATGCCGTG
GGCGTGGCCA AGCGCGTGCG CGCGGTGCTG GACGAAGCGC AGGCGCATTT CCCGCCGGGC
GTGCGCTACG AGGTGGCGTA CGACAGCTCG CGCTTTGTCG GCATCGCCAT CGAGCAGGTG
GTCAAGACGC TGCTCGAAGC CGTGGTGCTG GTGTTCCTGG TGATGATGCT GTTCATGCAG
AACCCGCGCG CGACGCTCAT CCCGACACTG GTCGTGCCGA TCGCCCTGCT GGGCACGTTT
GCGGTAATGC TGCCGATGGG TTTTTCCATC AACGTGCTGA CGCTATTCGG CCTGGTGCTC
GCCATCGGCA TCCTCGTGGA CGATGCCATC GTGGTGGTGG AAAACGTCGA ACGCGTGATG
CACGAAGAAG TGCTGTCGCC GCGCGAGGCG ACGGCCAAGG CGATGCGGCA GATCAGCGGG
GCCATCGTCG GCATCTCGCT GGTGCTGACG GCGGTGTTCG TGCCGATGGC GTTCTTTGGC
GGCGCGGTGG GCAACATCTA CCGGCAGTTT TCGCTGTCGC TGGCGGTGTC GATGGTCTTC
TCGGCATTCC TGGCACTGAC GCTTACGCCC GCGCTTTGCG CGACGCTGCT CAAGCCGGTG
CAGGCTGGCC ACGGTGTGGA GCGCAAGGGC TTCTTCGGCG CATTCAACCG GGGCTTTGCG
CGGTTGACGG CGCGCTACCA AGGCGGCGTT GCCAGGCTGC TGAACCGCAC GGGCCGCGCG
CTGGTGGCGT ACGGCGCCGT CATCGGCGTG GTGGTGCTGC TGTTCACGCA ACTGCCCACG
GCCTTCCTGC CGGAAGAGGA CACCGGCGAG TTCATGACCG TCGCCATGCT GCCGACCGGC
GCCACGCAGG CGCAGACGCT CGACGTCGTG CGGCAAGCCG AGCAGCACTT CATGACGCAG
GAGCCGGCGG TGGCGTCGAC GCTGGCCATC ACGGGCTTCA GCCTGTACGG CAACGGGCAG
AACGCGGCCA TGCTGTTTCT GACGCTCAAG GACTGGAAGG AACGCAAGGG CGGTGACCAG
CACGTCGATG CCGTGGTCGC GCGCGCCAAC GCGGCGTTCG GCAAGATCAA GGGCGCGATG
GTCATGGCGA TGAACTCGCC CGCGCTGCCG GAGCTGGGCA GCAAGCCCGG CTTCGACCTG
CGTCTGCAGG ACCGCGGCGG CGCCCGCTAC GAGCGCCTCG CGCAGGCACG CGACCGCATG
CTTGCTGAGG CCGCGCAGCA TCCCGCGCTG TCGAAAGTCA CGTTTGCGGG CCAGGGCGAT
GCACCGCAGG TGTTGATTGA TGTGGACCGC AAGAAAGCGC TGTCGATGGG TGTGTCGATT
GAGGACATCA ACCGCACGCT GGCCGTGATG TTCGGCTCCG ACTACGCGGG CGATTTCGTC
TATCGCAACC AGGTGCGCCG CGTGATCGTG CAGGCCGACG GCAAGCAGCG TGTCTCGGTC
GAGCAGCTTG GCCGCATGCA TGTGCGCAAT GCGGCGGGGG CGATGGTGCC GCTCTCCGCG
TTCACTACGA CGAAGTGGAT CGTGGGGCCG CTCAAGCTCG ATCGCTACAA CGGTTTTCCG
GCCATGACGA TCACCGGCTC GCCCGCGCCG GGTCACAGCT CGGGCGAGGC GATGGCGGCG
ATGGAGTCGA TTGCGCGCGG TCTGCCCGAA GGCTTCGGCT ACGAGTGGAC GGGGCAGTCG
TTCGAGGAGC GGCTGTCGGG TGCGCAGGCA CCGGCGCTGT TTGCGTTGTC GATCCTCGTC
GTGTTCCTGT GTCTGGCGGC GCTGTACGAG AGCTGGTCGA TTCCGCTGGC GGTCATGCTG
GTGGTGCCGC TGGGCGTGCT GGGTGCGCTG CTGGGCGCCA CGCTGCGCTT CCTGCCCAAC
GATATCTACT TCAAGGTCGG GCTCATTGCG ACCATCGGCC TGTCGGCCAA GAACGCGATC
CTGATCATCG AGGTGGCCAA GGATCTGGTG GCGCAAGGCA TGGGCCTGAT TGAAGCCACG
CTGGAGGCCG CACGGTTACG CTTCCGGCCG ATCGTGATGA CGTCGCTGGC GTTTGCATTT
GGTGTCGTGC CGCTGGCGAT TGCAAGCGGC GCGGCATCGG CCAGCCAGCG CGCTATCGGC
ACGGGCGTGC TGGGCGGGAT CATCGCGGCA ACGGTGCTGG CAGTGTTCCT GGTGCCGGTG
TTCTTTGTGG TGGTGCGGCA CGTGTTCAAA GGCAGCGAGC GGCAGCGCCG GCTGGATGCG
GCGCACGAGC ACGAGACGGC CGGGCCGGCA GCCTGA
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| Protein sequence | MARFFIDRPV FAWVIALAII LAGVLALPKL PVAQYPNIAP PNVSISANYP GASARTVESA
VTAIIEREMN GAPGLLYMSS SSDAAGNVSI NLSFTQGTSP DLAAVEVQNR LKIVEERLPE
VVRRNGIRIE KAAENYMMYL SLTAERGRFD GIDLGDLASS DLIPQLRRVP GVGTAQLFDA
EYAMRIWPDA DKLTALGLTA GDLSDAVRRY NARITVGEIG SGAVPGNAPI NASVTGDDGL
TTPDAFGQIP LRAGAQGRMV LLRDVARVEL GGSDYLYLSR MNGKPATTIG IKLAPGANAV
GVAKRVRAVL DEAQAHFPPG VRYEVAYDSS RFVGIAIEQV VKTLLEAVVL VFLVMMLFMQ
NPRATLIPTL VVPIALLGTF AVMLPMGFSI NVLTLFGLVL AIGILVDDAI VVVENVERVM
HEEVLSPREA TAKAMRQISG AIVGISLVLT AVFVPMAFFG GAVGNIYRQF SLSLAVSMVF
SAFLALTLTP ALCATLLKPV QAGHGVERKG FFGAFNRGFA RLTARYQGGV ARLLNRTGRA
LVAYGAVIGV VVLLFTQLPT AFLPEEDTGE FMTVAMLPTG ATQAQTLDVV RQAEQHFMTQ
EPAVASTLAI TGFSLYGNGQ NAAMLFLTLK DWKERKGGDQ HVDAVVARAN AAFGKIKGAM
VMAMNSPALP ELGSKPGFDL RLQDRGGARY ERLAQARDRM LAEAAQHPAL SKVTFAGQGD
APQVLIDVDR KKALSMGVSI EDINRTLAVM FGSDYAGDFV YRNQVRRVIV QADGKQRVSV
EQLGRMHVRN AAGAMVPLSA FTTTKWIVGP LKLDRYNGFP AMTITGSPAP GHSSGEAMAA
MESIARGLPE GFGYEWTGQS FEERLSGAQA PALFALSILV VFLCLAALYE SWSIPLAVML
VVPLGVLGAL LGATLRFLPN DIYFKVGLIA TIGLSAKNAI LIIEVAKDLV AQGMGLIEAT
LEAARLRFRP IVMTSLAFAF GVVPLAIASG AASASQRAIG TGVLGGIIAA TVLAVFLVPV
FFVVVRHVFK GSERQRRLDA AHEHETAGPA A
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