Gene Rpic_0779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0779 
SymbolrpsA 
ID6286818 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp825213 
End bp826901 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content59% 
IMG OID642624343 
Product30S ribosomal protein S1 
Protein accessionYP_001898362 
Protein GI187927875 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0539] Ribosomal protein S1 
TIGRFAM ID[TIGR00717] ribosomal protein S1 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0110313 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCAAA CTAACGAATC TTTTGCCGCC CTGTTCGAAG AGTCGATCGC CAAGTCCAAT 
ATGAAGGCTG GCGAAGTGAT CTCTGCGGAA GTTGTGCGTA TTGACCACAA CTTCGTCGTT
GTGAACGCGG GCCTGAAGTC TGAAGCTTTT GTTCCGGTCG AAGAGTTCCT GAACGATCAG
GGCGAGCTGG AAGTGCAAGT CGGCGACTAC GTTTCGGTCG CAATCGACGC GCTGGAAAAC
GGCTACGGCG ACACCATCCT GTCGCGCGAC AAGGCCAAGC GTCTGGCTTC GTGGCTGAAC
CTTGAGAAGG CACTGGAATC CGGCGAGATC ATCTCCGGTA CCGTGACCGG CAAGGTCAAG
GGCGGCCTGA CCGTCATGGT CAACGGTATT CGTGCATTCC TGCCGGGTTC GCTCGTCGAC
GTGCGTCCGA TCAAGGACAC CACGCCGTAC GAAGGCAAGA CCCTCGAATT CAAGGTCATC
AAGCTGGACC GCAAGCGCAA CAACGTTGTG CTGTCGCGCC GTGCCGTGGT TGAAGCCACG
CTGGGCGAAG AGCGTCAGAA GCTGATGGAA ACGCTCAAGG AAGGTGCGAT CGTCAACGGT
ATCGTCAAGA ACATCACCGA CTACGGCGCG TTCGTGGATC TGGGTGGCAT CGACGGTCTG
CTGCACATCA CCGACCTGGC ATGGCGTCGT GTCCGTCACC CGAGCGAAGT GCTGTCGGTT
GGCCAGGAAA TCACCGCCAA GATCCTCAAG TTCGACCAAG AGAAGAACCG CGTCTCGCTG
GGCGTCAAGC AGTTGGGCGA AGATCCGTGG GTCGGCATCT CGCGCCGCTA CCCGCAAGGC
ACCCGCCTGT TCGGCAAGGT CACCAACCTG ACCGACTACG GCGCGTTTGT AGAGATCGAA
GCCGGTATCG AAGGCCTGGT CCACGTGTCG GAAATGGACT GGACGAACAA GAACGTGGCC
CCGTCGAAGG TTGTCCAGCT GGGCGACGAA GTGGAAGTCA TGGTTCTGGA TATCGACGAA
GACAAACGTC GTATCAGCCT GGGCATGAAG CAGTGCAAGG CCAACCCGTG GGACGATTTC
GCACGCAACC AGAAGAAGGG CGACAAGCTG GCTGGCCAGA TCAAGTCGAT CACCGACTTC
GGCGTGTTCA TCGGTCTGCC GGGCGGCATC GACGGCCTGG TGCACCTGTC GGACCTGTCG
TGGCAAGAGA CTGGCGAAGA AGCCGTTCGC AAGTACAAGA AGGGCGACGA AGTGGAAGCC
GTTGTGCTGG CCATCGATGT CGACAAGGAA CGCATCTCGC TGGGTATCAA GCAACTGTCG
GGCGATCCGT TCAACAACTT CATCTCGACC AACGACAAGG GTTCGATCGT GCAGGTCACG
ATCAAGGCCG TTGATCCGAA GGGTGCCGTG GTGCAGCTGG CTGACGACGT GGAAGGCTAC
CTGCGCGCCT CGGAAATCTC GAGCGACCGC GTGGAAGATG CCCGCAACGT GCTGAAGGAA
GGCGAAACGA TGACCGCGAT GATCGTCAAC ATCGATCGTA AGTCGCGCAA CATCAACGTC
TCCATCAAGG CGAAGGACAG CGCCGACCAA CAGGAAGCGA TGCAGAAGTT CTCGGCGGAT
ACCGGCGCAG CTGGTACCAC GAATCTCGGC GCGCTGCTGA AGGCCAAGCT GAACGAGACC
AACCAGTAA
 
Protein sequence
MSQTNESFAA LFEESIAKSN MKAGEVISAE VVRIDHNFVV VNAGLKSEAF VPVEEFLNDQ 
GELEVQVGDY VSVAIDALEN GYGDTILSRD KAKRLASWLN LEKALESGEI ISGTVTGKVK
GGLTVMVNGI RAFLPGSLVD VRPIKDTTPY EGKTLEFKVI KLDRKRNNVV LSRRAVVEAT
LGEERQKLME TLKEGAIVNG IVKNITDYGA FVDLGGIDGL LHITDLAWRR VRHPSEVLSV
GQEITAKILK FDQEKNRVSL GVKQLGEDPW VGISRRYPQG TRLFGKVTNL TDYGAFVEIE
AGIEGLVHVS EMDWTNKNVA PSKVVQLGDE VEVMVLDIDE DKRRISLGMK QCKANPWDDF
ARNQKKGDKL AGQIKSITDF GVFIGLPGGI DGLVHLSDLS WQETGEEAVR KYKKGDEVEA
VVLAIDVDKE RISLGIKQLS GDPFNNFIST NDKGSIVQVT IKAVDPKGAV VQLADDVEGY
LRASEISSDR VEDARNVLKE GETMTAMIVN IDRKSRNINV SIKAKDSADQ QEAMQKFSAD
TGAAGTTNLG ALLKAKLNET NQ