Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0766 |
Symbol | |
ID | 6288743 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 807802 |
End bp | 811584 |
Gene Length | 3783 bp |
Protein Length | 1260 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642624330 |
Product | protein of unknown function DUF748 |
Protein accession | YP_001898349 |
Protein GI | 187927862 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.172009 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0206816 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCTCCT CCCCCGATTC GCGCCCCGAT CTGCAATCGA ATACCGCCGG CTGGCGCGCA CGGCTTGATC GCCTGCGCGG TACGGCCGGC TGGCAACGCG CGGCGCAGGT CGGCACGTCG CGTCGCACCA AGCGCATCGG GATCGGCGTG CTGATCTTTC TGGTGATGTT CGGGCTACTG GGTGCATTCG GCGGCCCGCC GTTGCTGCAC CACCTGGCGC AAACGCAGCT CAGCCAGCTC CTGGAACGGC CGGTTTCGGT CGGCAAGATC AGCATCAACC CATACACGCT GCGGCTTGAT GTCGACCAGC TCCACATTGC CGAGCGCGAC GGCAAGACGC CGTTCGTCGA TGTCGGCCAT CTGCATGTGA ACGCGTCGTG GAGTTCGATC TTCCGCCGCG CGCCCGTGAT TGAAGAACTC AGCATCGATG CGCCGCACGT GCGTATCGTG CGCACCGCCG AACAGCGTTT CAACTTCTCC GACATCGTCG ACAAGCTAAG CCAGCCGGAA ACCGCGCCCA AGCCCAAGTC GAACGAGCCG GCACGTTTCG TCTTTGCCAA TCTGCAGTTG ACCAACGGCG CCATCGACTT TGTCGACCAG CCGCTCGGCG GGCAACACAA GGTGGAGGGC TTGCAGATCG GCGTGCCTTT CGTGGCGAGC CTGCCGGCAG ACGTGGACAT CTTCGTGCAG CCTTTGCTGG TTGCCCGCAT CGACGGCGCG CCGCTGCATT TCGCGGGCAA GACAAAGCCG TTTGCCGATT CGCTCGAATC GAACCTCAAC GTCAAGATCG ACGGACTGGA TCTGCCCCGC TATCTCGGCT ACGTACCCGG CCCGCTGCCG GTGGCGGTTC CACAAGGCAA GCTGACGACC GACCTGACGA TCGACTTCCA GAAGCCCAAG AGCGGCACAC CAGTGCTGCG CGTGCATGGC ACGACCGGCC TCGACAACCT CGAAGTGGTC GACGCCAGGA AAGCGCCACT GGTGGCCGCC AAGCAGGTGC GCGCAACGCT TGCCGACGTG CGCCCGCTCG ACAACGTGTT CCACCTCGAT GCGCTGACGC TGGATGGCGT GCGCGTTAAC GCCACGCGCG GTGCGGATGG AGCGATCAAT TTCGCGCAAC TCGCCGGCAA GCCGGCACCT GCCGAAGCGA AAGCTGCCAC GGCCGAGGCC GCGACCACCG CCAAGCCGAA ACCGTTGGAT GTGGCGGTCA ACAAGCTGCA ACTGACCAAC AGCACCGTCC ACTGGCGTGA CGCGACCACG CAGCCGGCTG CCGACCTGAT ACTGGAAGAC CTCCACGGCG ACATTCGCGT GCGTACGTTG GGCGGTCCGA CCTCGCTCGA TGTGGGCGCC AAGCTGGCGC AAGGCGGCAC GCTCAATGTC AAAGGCAACA CATCGCTGGA GAAGAACACC GGCGAGCTGG AACTGAAGCT GGACGGCGTG AAGCTGGTCG GCATCAGCCC GTATCTGCGC CAGGCGGGCG CACCGCAATT GCAGAGCGGT GCGCTATCGG CCGACGGCAA GGTGGCGCTC GAATTCGGGC CGGACAAATT CAACGTGCGC GCGGAACCGC TGACCGCAAG CCTGGCCGAC CTGTCACTGG CGCCGGCCAC GGGCAAGGAC ACCGCGCTGC GAGCCAAGCT GCTGCGCGCA GAGGTGAAGC GCTTTGACCT GAGCGCCCGC ACCATCGCCC TGAACGAAGT GCGCGCCGAT GGCCTGCAGA TCGATGCGTT GCGCAAGAAG GACGGCACAA CCACGTTGAC GCTGCTCGAT GGTCCGCAAT CGGTGGCGGG CAAGTCGACA GCGCCGGCCA AGTCCAGCGC AAAGTCGAAC GCGCCGGCCG AAAAACCCTG GGCAGTGACC GTACAAACGC TGAAGCTGGA CAACAGCGCT GTCGGCTTTG AAGACCAATC GAACTCGCGC CCGGTCAAGG TGCGTGTCGA GCCGCTGAAC GTGGTCGTGC AGAACGCCTC CTCCGATCTC GGCAAACCGG TCAGCGTGCA GATTGGCGCA GGGCTGGGTG CCAAGGGCAA GCTCGATGTG CGCGGCGAGG TCGTGCCGCA GCCGCTCAAG GCCGACCTGC GCGTGAACTC GCAGAACCTG TCGCTGGCAG GCTTCGATCC GTATCTGGAC AAGTCGTTGA ACGCGGCCAT CACCAGCGCG CTGCTATCGA TGGACGGGCG CCTCGTGCTC AACCAGGGCA AGGCGCTGAC GGTGAACTAC CAGGGCAACG CGACACTGGG CAACGTCCGC CTGCAAGACC GCGTGAGTTC GGATGACTTC CTGCGCTGGC GCTCGCTCGC GCTCAACCGC ATCCAGGCCA ACTACGACGG CACTACGCCG CGCGTGCGGG TGGGAGCGAT GGCGCTGTCG ACGTTCTACG CGCGGATCAT CATCAACCCG AATGGGCGCC TGAACCTGCA GGACATCCGC GTGCAGCCGA CCGAGGAGCG ACGCTCGCTG ACGCAAAGCG AACCTGCATC GGCATCGGCC GCAGCGGCTT CCGCCCCGGC AGCCGCGCCC GTGACGGCTT CGGCTCCGAC TGCGGCACCC GCATCGGCCG TCACCGTCAC AGCCACGGGC CCCACGCCCA AAGCCGGCGG CGCCGACCTG CGCGTTGACG CCATCACGCT GCAGGACGGC AACATCCGCT TCACCGACAA CTTCGTCAAG CCGAACTACA CCGCCAACCT GACCGCCATC GGAGGCTCGA TCGGTACGAT CAGCACGGCG GCCAACCAGA CACCCGCAGA TGTGACGCTG CGCGGCAGTG TCGACAGCAC GGCACCGGTG GACATCCACG GCAAGGTGAA CCCGCTCGCT CCCATGGCCT TTGTCGACCT GACGGCCAAG GCCGACGGCG TGGAACTGAC CAACCTCACG CCCTACTCCG CCAAGTACGC CGGCTACCCG ATCACCAAGG GCAAGCTGAC GATGGATCTG CACTACCTGC TCGACCAGGG CAAGTTGACC GCCGACAACC ACATCTTCAT CGACCAGCTC ACCTTCGGCG ACCGCGTAGA AAGTAAGGAC GCGACCAATC TGCCGGTGCG GCTGGCAGTG GCGCTGCTGA AGAATTCGCG CGGCGAGATC GACGTGCGCG TGCCGGTATC GGGCTCGCTC GATGACCCAC AGTTCAGCAT CGGCGGCGTC ATCCTGCGTG CATTCGTCAA CCTCATCGCG CGCGCCGTGA CGGCGCCGTT CTCGCTGCTG GCCAGCGCGT TTGGCGGCAG CGGCGGCGAA GAACTCGGCT ACATCGAGTT CGACCCCGGC ACGTCGAACA TCGGCCAGGC GTCCTTGGCC AAGCTCGACA AGCTCGGCAC TGCGCTGAAG GACCGCCCGG CGCTGAAGGT CGACATCATC GGCCGCGTCG ATCCGGAATT CGACCGCGAC GGCCTGCGCC GGGAAGCCGT GAACCGTCAG ATTCGCGAGC AGAAACTCAA GGACGCCGGC GACGCTGCTG AGGCAGATAC CACCGTCAAG CCGGAAGAGG AGAACAAGTA CCTTGAACGC GCATACAAAG CCGCCAAATT CCCGAAACCG CGCAACGTGA TCGGGCTGGC CAAATCCTTG CCGCCCGACG AGATGCGCAA GCTAATGGAA ACCAACGTGC AAGTGACGGA TGCGGATTTG CGTGAGCTCG CGCAGCGTCG GGCGAATGCG GTGCATGTTG CACTTGCTGA ACGCGTGGAT CCGGGGCGCC TCTTTGTTGT CGCCCCCAAG CTCAACGCAG AAGGCATCAA GGACAAGGGC AAGACGACGC GGGTTGATTT CTCGCTGAAG TAG
|
Protein sequence | MSSSPDSRPD LQSNTAGWRA RLDRLRGTAG WQRAAQVGTS RRTKRIGIGV LIFLVMFGLL GAFGGPPLLH HLAQTQLSQL LERPVSVGKI SINPYTLRLD VDQLHIAERD GKTPFVDVGH LHVNASWSSI FRRAPVIEEL SIDAPHVRIV RTAEQRFNFS DIVDKLSQPE TAPKPKSNEP ARFVFANLQL TNGAIDFVDQ PLGGQHKVEG LQIGVPFVAS LPADVDIFVQ PLLVARIDGA PLHFAGKTKP FADSLESNLN VKIDGLDLPR YLGYVPGPLP VAVPQGKLTT DLTIDFQKPK SGTPVLRVHG TTGLDNLEVV DARKAPLVAA KQVRATLADV RPLDNVFHLD ALTLDGVRVN ATRGADGAIN FAQLAGKPAP AEAKAATAEA ATTAKPKPLD VAVNKLQLTN STVHWRDATT QPAADLILED LHGDIRVRTL GGPTSLDVGA KLAQGGTLNV KGNTSLEKNT GELELKLDGV KLVGISPYLR QAGAPQLQSG ALSADGKVAL EFGPDKFNVR AEPLTASLAD LSLAPATGKD TALRAKLLRA EVKRFDLSAR TIALNEVRAD GLQIDALRKK DGTTTLTLLD GPQSVAGKST APAKSSAKSN APAEKPWAVT VQTLKLDNSA VGFEDQSNSR PVKVRVEPLN VVVQNASSDL GKPVSVQIGA GLGAKGKLDV RGEVVPQPLK ADLRVNSQNL SLAGFDPYLD KSLNAAITSA LLSMDGRLVL NQGKALTVNY QGNATLGNVR LQDRVSSDDF LRWRSLALNR IQANYDGTTP RVRVGAMALS TFYARIIINP NGRLNLQDIR VQPTEERRSL TQSEPASASA AAASAPAAAP VTASAPTAAP ASAVTVTATG PTPKAGGADL RVDAITLQDG NIRFTDNFVK PNYTANLTAI GGSIGTISTA ANQTPADVTL RGSVDSTAPV DIHGKVNPLA PMAFVDLTAK ADGVELTNLT PYSAKYAGYP ITKGKLTMDL HYLLDQGKLT ADNHIFIDQL TFGDRVESKD ATNLPVRLAV ALLKNSRGEI DVRVPVSGSL DDPQFSIGGV ILRAFVNLIA RAVTAPFSLL ASAFGGSGGE ELGYIEFDPG TSNIGQASLA KLDKLGTALK DRPALKVDII GRVDPEFDRD GLRREAVNRQ IREQKLKDAG DAAEADTTVK PEEENKYLER AYKAAKFPKP RNVIGLAKSL PPDEMRKLME TNVQVTDADL RELAQRRANA VHVALAERVD PGRLFVVAPK LNAEGIKDKG KTTRVDFSLK
|
| |