| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0664 |
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| Symbol | |
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| ID | 6288740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 704916 |
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| End bp | 706028 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642624226 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001898247 |
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| Protein GI | 187927760 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.304545 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCTCCG ACTTCGACCA CGCCATGATG CAGCGCGCCC TGGCGCTGGC CGAGAAGGGC
TTGTTCACCA CCACGCCCAA CCCGCGCGTC GGATGCGTGA TCGTGCGAGA CGACACCGTC
ATCGGCGAGG GCTACACGCA ACCCGCCGGA CAGGACCACG CTGAAATCCA AGCCATCAAG
GATGCTCAGT CGCGCGGCCA GGACGTGCGC GGCGCCACCG CCTATGTGAC GCTGGAGCCC
TGCAGCCACT TTGGCCGCAC CCCGCCCTGC GCGGATCGTC TCGTCGAAGC GGGGATCACC
CGCGTGGTGG CGGCCATGGA AGATCCAAAC CCCGCTGTCT CCGGACGCGG CTTGCAGAAG
CTGCGCGATG CCGGGGTCGA CGTGCGCTGC GGGCTGCTGG AGCGGGAGGC GCGTGAGCTG
AACATCGGTT TCGTTTCGCG CATGACGCGC GGCACGCCCT GGGTGCGTGT GAAGGTCGGC
GCTTCGCTGG ACGGCCGCAC CGCGCTGGAC AACGGCATCA GCCAGTGGAT TACCGAAACC
GAGGCGCGCA ACGACGGCCA CCGCTGGCGC GCGCGCGCCT GTGCCATCCT CACCGGTATC
GGCACGGTGC GCGAAGACAA TCCGCGACTG ACCGTGCGCG CCATCAACAC GCCGCGCCAG
CCTCGCCGCG TGCTGATCGA CTCGGCGCTG GACGTGCCAC TCGACGCCCA CATCCTCACC
GCAGATGGGC ACCACGAGCC GACGCTCATT TTTGCCGCTC AACCCGAAGC TGGCCGCATG
CGTGCGTTGA GCGAGCGCGG CGCGGAGGTC ATCCTGCTGC CGAACGCCGC AGGAAAAGTC
GATCTGGCCG CAGTCCTGCG CGAACTGGGT CGCCGCGAAA TCAACGAGCT GCACGTCGAA
GCCGGCTTCA AACTCAACGG CTCGCTGCTG CGCGAAGGGC TGGTTGACGA GATCCTCGTC
TATCTGGCAC CCAAGGTGCT CGGCTCGGGC CAGGGCATGT TCAATATGGG GCCGCTGCAG
ACGCTGGAAG GCGCGGCCGA ATTCTTCTTT CACGATATCT CGCGCATCGG GGGCGATCTC
CGCATCCTGG CGCGCCGCAA CCCGACGGAT TGA
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| Protein sequence | MFSDFDHAMM QRALALAEKG LFTTTPNPRV GCVIVRDDTV IGEGYTQPAG QDHAEIQAIK
DAQSRGQDVR GATAYVTLEP CSHFGRTPPC ADRLVEAGIT RVVAAMEDPN PAVSGRGLQK
LRDAGVDVRC GLLEREAREL NIGFVSRMTR GTPWVRVKVG ASLDGRTALD NGISQWITET
EARNDGHRWR ARACAILTGI GTVREDNPRL TVRAINTPRQ PRRVLIDSAL DVPLDAHILT
ADGHHEPTLI FAAQPEAGRM RALSERGAEV ILLPNAAGKV DLAAVLRELG RREINELHVE
AGFKLNGSLL REGLVDEILV YLAPKVLGSG QGMFNMGPLQ TLEGAAEFFF HDISRIGGDL
RILARRNPTD
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