Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0591 |
Symbol | |
ID | 6288423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 625410 |
End bp | 627401 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642624152 |
Product | type II and III secretion system protein |
Protein accession | YP_001898174 |
Protein GI | 187927687 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.341845 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0532026 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACGA ACCAAAAAAC CAATGGCGCC AACGTCACGC TACGTGGCGT ACAGGTCCTC GGCAGCACAC GCATGCTCAT TCTGGCGAGT GCCGCCGGTG CCATGCTCTG CATGCCTACG CATGCGACAG CACAAGCGGC CATGGAGGCA GGCGCCGTAG CCAAGTCCAC CACAGCACCG GTCGTGATGC AGTCTCGCGC CGGTGCATCC GCACCGGTGC AGATGACGAT CAGCATGAAC CCGGCGCTGG CGACCGCACC GGTGGCCGAT GTACGCGGGC CGAACTGCAC GGGCGCCGTG CGCGGCGAAA GCAGCGTGGT GGTGCCGGTT GGCAAGTCTT CGCTCATCTC GCTGCCGGAG CCCGTGCGCA ATCGCACGCT GGGCAATCCG GCTGTGGTGC AGGCCACCAT GGTGTCGCCG CAATCCATGT ATCTGCTGGG CCGCAGTGTG GGCACCACCA ACATGATCGT GCAGGGGCGC AGCGGCGCCT GCAGCATCGT CAATGTGGTA GTTAACGCCG ATGCCGGTGG CCTGCAGACT TCGCTCGCGC AGCTGATGCC GGGTGAAAAC AAGATTCGCG TGATGACCGC GGCAGACAGC CTTGTACTGG CCGGCAACGT GTCGAGCGCA CAGGCGGCGC AGCAAGCCAT GGAAATCGCC CACGCCTATG CAGCTTCTGC ACAAAGCGGT GCGGACAAGG GCGGCGGTGC GGCAGGTGCA CTCGGCGGTG GTGGTGCCGC CGGCGGTGCC AACGTCATCA ACATGATGAT CGTGGATACA CCGCAGCAGG TCATGCTGGA AGTCAAGGTG GCGGAAGTGT CGAAGACCCT ATTGAACCAG CTGGGCTCGG CACTCAATGT CCAAGGCGGA TTCGGCTCGT GGAGCGGCGG CCTCCTGACC TCCCTGTTGA CCGGCTCGTC TACCGGGTTC TTTGCCAACA AGGCGAACAA CCGGCCCTTC CAGGTTGAGT TGGATGCGCA AAAGAACGAC AGCCTGGTGA AGATCCTTGC CGAGCCGAAT CTCGTCACGC TCAGTGGCCA GGAAGCCAGC TTCCTGGCAG GCGGCAAGAT CTACATCCCG GTTGCGCAGA GCAGCAGCTC AGGTGGCGCT CCCACCATCA CGCTGCAAGA GGAGGAGTAT GGCGTTGGCC TGAAGTTCAC GCCAACCGTA ATGGCCAATG GCCGCATCAA CCTCAAGGTG GCACCGGAGG TATCGGAACT TTCGCCCACG GGCGCAACTG TCACCGGTGC CAACACGAAC GGCCAGACCA TCCTGCCGCT CATCACCACG CGGCGCGCCT CCACCACCGT GCAGATGCGT GACGGAGAGA GCTTTGCCAT CGGTGGGCTG CTGCAAGACA ACGCGCGCGG CTCACTGAAG GCATTGCCCG GCGCGGGTGA AATCCCCGTC CTGGGCACCC TCTTCCGCAG CACGCAGTTC CAGCATGACC TGACGGAGCT GGTCATCGTC ATCACGCCGC GCCTGGTGCA GCCAATGCAG ACGGCCTCGT ATCCGCTGCC GACTGACAGC TTCTCGACGC CCAACGAGCT TGCCGTCTAC CTGACGGGCA ACATGGAAGG CTCCGGCGCC AAGAACCGCG CGGCCAAACC AGCAACGGCC GCCGCACCTG CAACGGCACC GCAGGTACCT GCGCAGGTAC CGAGCGCACC CGCTGCCCCC AGCTCGCAGG CGCCGATGCC GGCTCCGGTT GCGCCCGCAC CGGTCGCTCC GGTCATCCCT GCACCACGCA CTGAGGTGAG CATCGCCCCG CCCACGCAGC CGGCAAACGG TGCGCCCGAA AAACCGGCGG CCGCGCAACC GGTTTGGGAA ACCGCGCCCG TTACAACATC GGCCACGGCG CCCACGGACG ACAATGCCGC GCGTGTTGCC CGAATCGAAG CCACTGCGGC ACGGCTGGCC CAGGCCAGAA CCAAGACGCA GGGCCGGCAG ACGGCAGTGG CCGACACGAC CACAACCCCG CAGACACGCT AA
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Protein sequence | MKTNQKTNGA NVTLRGVQVL GSTRMLILAS AAGAMLCMPT HATAQAAMEA GAVAKSTTAP VVMQSRAGAS APVQMTISMN PALATAPVAD VRGPNCTGAV RGESSVVVPV GKSSLISLPE PVRNRTLGNP AVVQATMVSP QSMYLLGRSV GTTNMIVQGR SGACSIVNVV VNADAGGLQT SLAQLMPGEN KIRVMTAADS LVLAGNVSSA QAAQQAMEIA HAYAASAQSG ADKGGGAAGA LGGGGAAGGA NVINMMIVDT PQQVMLEVKV AEVSKTLLNQ LGSALNVQGG FGSWSGGLLT SLLTGSSTGF FANKANNRPF QVELDAQKND SLVKILAEPN LVTLSGQEAS FLAGGKIYIP VAQSSSSGGA PTITLQEEEY GVGLKFTPTV MANGRINLKV APEVSELSPT GATVTGANTN GQTILPLITT RRASTTVQMR DGESFAIGGL LQDNARGSLK ALPGAGEIPV LGTLFRSTQF QHDLTELVIV ITPRLVQPMQ TASYPLPTDS FSTPNELAVY LTGNMEGSGA KNRAAKPATA AAPATAPQVP AQVPSAPAAP SSQAPMPAPV APAPVAPVIP APRTEVSIAP PTQPANGAPE KPAAAQPVWE TAPVTTSATA PTDDNAARVA RIEATAARLA QARTKTQGRQ TAVADTTTTP QTR
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