| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0562 |
|---|
| Symbol | |
|---|
| ID | 6288712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 595293 |
|---|
| End bp | 596468 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642624124 |
|---|
| Product | glycosyl hydrolase BNR repeat-containing protein |
|---|
| Protein accession | YP_001898146 |
|---|
| Protein GI | 187927659 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4692] Predicted neuraminidase (sialidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.270788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.469707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCA CCCTTCCGTC CTACGCCGCC TTCGATTCGA ACGTGCGAGC TGCCTATACC
GACGCCGAGC GCCGCGAAGC GTTCCTGCCC ACACCTTGCG TTCAAAACCA CGCGGCCAAC
CTGCACGCGC TGCCCAACGG CGACTTGCTG TGCGTGTGGT TTGGCGGCAC GCAGGAAGGC
ATTCCCGATG TATCGATCTA CCTGTCTCGG TTGGCGGCAG GCACCTCCGA ATGGCAGCCT
GCGACCAAGC TATCGGAAGA CACGACACGA TCGGAGCAGA ACCCGGTACT GTTCACCACA
CCCACCGGCG AACTCTGGCT GATCTACACC GCGCAGCTTT CGGGACACCA GAACACAGCC
ATCGTGCGCC GGCGTATCTC GACAGACGGC GGCCGAAGCT GGGGGCCCAT CGATACGCTG
TTCGACCAGG CCGGCACCTT CGTGCGCCAG CCAATCGTCG TGCTGCCCGA CGGCGCGTGG
GCCTGCCCGG TCTTCCTGTG CCGCACGCAA CCAGGGGAAC GCTGGGTCGG CAATGACGAC
ATCAGCGCCG TCATGATCTC CGAAGACCAG GGCCGCACCT GGAGCCGCCA CGACGTGCCC
GACAGCATCG GCTGCGTGCA CATGAACGTG CAGACACTGG CCGACGGCAG CCTGCTGGCG
CTGTACCGCA GCCGCTGGGC AGATCACATC TACGCCAGCC GCTCGCAAGA CGGCCGTACC
TGGAGCGCAC CGCAGCCGAC AACGCTGCCC AACAACAATT CGTCGATCCA GTTTGTGGCA
CTGCGAAACG GTCATCTCGC GCTGGTCTAC AACGAGAGCG ATGCCTCGCA CAGCACCGGT
CGACGCACCT CGCTGTACGA CGACATTGAA GACGCCGAAG ACCATGGCGA GCTGCGCGAC
CAGCAGGCAT CCACGCGGGG CACCGCTTTC TGGGGCGCCC CGCGTGCGCC GCTGTCGCTG
GCCATCTCGG AAGATGGTGG CCAAACCTGG CGCCGCCGCA ACATTGAAAT TGGCGACGGT
TATTGCATGA CCAACAATTC AGCCGACCAG CGCAACCGCG AGTATTCGTA TCCCTCCATC
GTGCAAGGGA ACGACGGCGC GCTGCACATC GCCTTTACCT ATTTCCGCCA GCGTATCAAA
TACGTGACGG TTGACGAATC GTGGGTGCGC GGCTGA
|
|---|
| Protein sequence | MTATLPSYAA FDSNVRAAYT DAERREAFLP TPCVQNHAAN LHALPNGDLL CVWFGGTQEG
IPDVSIYLSR LAAGTSEWQP ATKLSEDTTR SEQNPVLFTT PTGELWLIYT AQLSGHQNTA
IVRRRISTDG GRSWGPIDTL FDQAGTFVRQ PIVVLPDGAW ACPVFLCRTQ PGERWVGNDD
ISAVMISEDQ GRTWSRHDVP DSIGCVHMNV QTLADGSLLA LYRSRWADHI YASRSQDGRT
WSAPQPTTLP NNNSSIQFVA LRNGHLALVY NESDASHSTG RRTSLYDDIE DAEDHGELRD
QQASTRGTAF WGAPRAPLSL AISEDGGQTW RRRNIEIGDG YCMTNNSADQ RNREYSYPSI
VQGNDGALHI AFTYFRQRIK YVTVDESWVR G
|
|---|
| |