Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0522 |
Symbol | |
ID | 6286658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 558979 |
End bp | 561162 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642624087 |
Product | TonB-dependent receptor |
Protein accession | YP_001898109 |
Protein GI | 187927622 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.569695 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCCGT TCCAGCCCAG CAAGCTGGTG ATGGCGCTTG CCGCCGTCCT GCCGTCCGTC GCCTCGGTTT CCGCCCTGGC TCAGGAGGCC ACGCCGCCGG CCGCCGCTCC TTCCACGCCC ACCACGACGG CACCCGCCAC CAACGTGCGC GACCTCAGCG AAACCCGCGT CACGGCCAAG CGCTTGGACG CCGCACGCAA TGCGCTGTCG CCGGACACCG GCAGCTCCGT CTACAAGTTC GACACCGATG ACATCGCCCG CCTGCCGCTG GGCGATGCCA CGCCGCTCAA CCAAGTGCTG CTGCAGGCGC CGGGTGTGGT GCAGGATTCG TACGGTCAGT TGCACGTGCG CGGGGACCAC TCCAACCTGC AGTACCGCAT CAATGGCGTG ATCGTGCCTG AGCCGATTAG CGGTTTCGGG CAGATGCTCG ATACACGCTT CGCCAACCAG ATCAACGTGT TGACCGGCGC ACTGCCCGCG CAGTACGGTT ACCGCACCGC CGGCATCGTC GACATCACCA CCAAAGGCGC ATCGACCGAT GAGGATGGCG AGCCGAAGGC CTTTGGCGGC GAGATCGGCA CGGTGCTCGG CAGCAATGCC ACGCACGAGG TCAATGCGCA GATCCAGGGC ACGAAAGACC GCTTCAGCTA TTACCTGTCG GGCGTGTTTG CCGAGAACAA CCTCGGCATT GAAAACCCCA CCGGCAACCG CAACGCCACG CACGACCACA CCACGCAAAA CAAGTCGTTC GGCATGCTGT CGTACCTGCT CGACAACGAC AGCCGCGTGA GCTTCATGTT CGGCACATCG AACGGCCGTT TCCAGATTCC GACGCGACCG GGCCTGACGC CGAAATTCAC GCTCGATGGC GCGGTGCCGC CGGCGTCGGA AGCCCTCAAC GCCAATCAGC GTGAGAAGAC CGACTTCCAG ATTCTGACGT ATCAGCAGAA GGTGTCGCCC AAGCTCGACT ACCAGGTGTC GGTCTTCCGC CGTGTCAGCC GCATCGATTA CATGCCCGAT CCGATCGGTG ATCTCGTCTA CAACGGCGTG GCCGCCGACA TTACCCGCCG CAACGAGGCT TACGGCGTGC AGGGCGATGC GAGCTACAAG CTGACCGACA AGCACACGCT GCGTGCCGGT GTGTTCGTTC AGCGCGAGCG CTACGTGGCC AACAACACCG CCAGCGTGTT TGCCGCCGAC GACTCCGGTG CGCAGACCAG CACCACGCCG TTCACCATCG TCGACAACCA CAGCGGCAGC GGCACGACCC TGGGCGTCTA CCTGCAGGAT GAGTGGAAGC CCACCGACAA GCTCACCGTC AACTACGGCG CGCGCTACGA CCGCGTCAAC ACCATCGTCA GCGAGCAGCA ACTGAGCCCG CGCCTTGGCC TGACGTACGA CCTGACGCCG CGTACCCGCG TGCATGCCGG CTACGCGCGC TACTTCACGC CGCCGCCCAC GGAGAAGTTC GACACCACGT CGGTGCAGGC CTTTGCAGGC ACGACCAACG CGCTGCCGTC GGACGCCAAC ACGGCCGTCA AGTCGGAGCG TTCGAACTAC TTTGATCTGG GGATTTCGCA CCAGCTCACG CCGCATCTGA CGCTGGGTCT GGATGCGTAT TACCGCGACG TGCGCCATCT GCAGGACGAA GGGCAGTTCG GCAACGCGCT GCTGTACTCG GCGTTCAATT ACGAGCGTGG CCGGATCTAC GGGCTGGAAG GCAGTGCGAA CTATCGCAAC GGCAACTTCG GGGCATACCT GAATCTGGCC GTGTCGCGCG CGCAGGGCAA GGGCATCGAG ACCGGCCAGT TCAACTTTGG TGCCAACGAG CTGGCCTATA TCAACAGCCA TTGGGTCAAC CTCGATCACG ACCAGCGCCT GACCGCGTCG GCTGGCGTGT CGTACCGGTA TTCCGGCACG ACGTATACGA GCGATGTGCT GTTCGGAACG GGCTTGCGTA ACGGCTTTGT CAACACCGAC CACCTGCCGG CCTACTGGCA GATGAACGTG GGCGCCGCCC GCGACTTCAA CCTGCCGACG CTGGGCAAGT TCAAGACGCG CCTGACCGTG CTGAACATCT TCGACCGCAG CTACCAGTTG CGCGACGGCA CGGGCATCGG CGTGGGGGCG CCGCAGTTTG CACCGCGCCG TACGTTCCTG TTGTCGGTCA GCAAGCCGTT CTAA
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Protein sequence | MIPFQPSKLV MALAAVLPSV ASVSALAQEA TPPAAAPSTP TTTAPATNVR DLSETRVTAK RLDAARNALS PDTGSSVYKF DTDDIARLPL GDATPLNQVL LQAPGVVQDS YGQLHVRGDH SNLQYRINGV IVPEPISGFG QMLDTRFANQ INVLTGALPA QYGYRTAGIV DITTKGASTD EDGEPKAFGG EIGTVLGSNA THEVNAQIQG TKDRFSYYLS GVFAENNLGI ENPTGNRNAT HDHTTQNKSF GMLSYLLDND SRVSFMFGTS NGRFQIPTRP GLTPKFTLDG AVPPASEALN ANQREKTDFQ ILTYQQKVSP KLDYQVSVFR RVSRIDYMPD PIGDLVYNGV AADITRRNEA YGVQGDASYK LTDKHTLRAG VFVQRERYVA NNTASVFAAD DSGAQTSTTP FTIVDNHSGS GTTLGVYLQD EWKPTDKLTV NYGARYDRVN TIVSEQQLSP RLGLTYDLTP RTRVHAGYAR YFTPPPTEKF DTTSVQAFAG TTNALPSDAN TAVKSERSNY FDLGISHQLT PHLTLGLDAY YRDVRHLQDE GQFGNALLYS AFNYERGRIY GLEGSANYRN GNFGAYLNLA VSRAQGKGIE TGQFNFGANE LAYINSHWVN LDHDQRLTAS AGVSYRYSGT TYTSDVLFGT GLRNGFVNTD HLPAYWQMNV GAARDFNLPT LGKFKTRLTV LNIFDRSYQL RDGTGIGVGA PQFAPRRTFL LSVSKPF
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