Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0508 |
Symbol | |
ID | 6289115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 542583 |
End bp | 545336 |
Gene Length | 2754 bp |
Protein Length | 917 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642624073 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001898095 |
Protein GI | 187927608 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0729931 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCGATA TCTTGAAAAA GAACCCAGAT ATGGACGCCA CCTCTGCTGA GCGGCCTGAC CGTCCTGGAC CGGATGTGAT CGACCAGGAC AGCCGCAGGC CGCTGCCGCT CGCTGATGAC CGCTACGAGG CGCTCGTCCG GCAAATGCCG GATGCGCTGT ACATCGTGGC GGACGACATT ATCGTTTTCG TCAACGAGGC GGGCGTTCGC CTGTTTGGCG CGCAGACGGC ACGCGACATC GTGGGCCATG AGCTGGACGA GTTCGTGCAC GACAACTCGA TGCACCTCGC CCGCCAGCGC CGGGAGTGGA TGGTCTCGCA CGGTGCAGGC TTGCCCCCGG TCGAGCAGAC CTTGCTGCGC TGCGATGGCA CACCAGTGGA GGTCGAGGTG CTTTCCGCGC CGGTGCAGCT TGGCTGGCGC ACCGCCATCC AGGTGGTGGC ACGCGACATC ACCCAGCGCA AGCAGGCCGA ACAGGCCCTG CGGGAATCCG AAGCCAATTA CCGTGCACTG GCCGCCGAAA CCGCACGCGC CAAGGAATTG CTGCGCTGCG AAAAGACCGT GCTCGAACTC AGCTCGCGCA ATGTGCCGTT GCCCGACCTG CTGGCCGAGG TGTGCCGGCT GGTGGAGGCC CTGCTCGACG ATGGCGCCAT GTGCTCGGTC CTGCTCAGTG CTGATGGCGA GCACATCACG CAAGCCGTGG CACCGTCGCT GCCTTGCACG CTCTCCCAGG TGCTGGTTGG GATCGCGATC GGCCCTTCGG TCGGTTCATG CGGCACGGCC ATGTTCCTGA ACAAGACCGT GGTGGTGGAA GACATCGACG CCGACCCGCT CTGGGACGGC TACCGCGACA TCGTTGCGCC GCTCGGCCTG CGCGCGTGCT GGTCGACGCC CATCCGCGGC GACAACGCGC AGATGATCGG CGCGATGGGC ATCTACTACG ACACCCCGCG TGCGCCCACG CGCGATGCCA TGGGGCTGCT CGACGGTATT ACCGACATCA TCGGTGTGGC CGTGCAGAAG GCGCATATCG CGCGCGATCT GAGGGAGAGC GAAGAACGCT ATCGCCTCGC CGTCGACAAC CTGACCGAAG GCATCGTCGT GCAGACGGCC GACGGCACCA TCCTCGCCTG CAACCCGAGC GCGCGGCGCA TTCTCCGGGC GGGCAGCGTG TCGCCGGTGG GCACCAGCCA CCTGGCGCTG ATGCGGCGCT CGTTGCGCGA AGACGGCAGC GAGATCCCGG TCAACGAGCG CCCCACGCGC GTGGTGCTGG CCACCGGCCG GCCGCTGCTG GGCTTGACTG TTGGCCTGGA ACTGGTTGAC GGCGATGTGG TGTGGGTGCA CGAAAACGTG CTGCCCATCG TGCGCCCTGG CGACAATACC CCCTCAGCCG TGCTGATCTC GTTCAACGAT ATCGGGCCGG CCCGCGCGGC CCAGCAGCAG CTCACTTTCC TCGCGCAGCG TGATGCGCTC ACCGGCTTGT ACAACCGCGC GTACTTCTCG CAGCGGATGC AGGCGGTGAT GGAGCAGGCC GCCAGCCAGG CCAACGAGGG GCATCAGGTC GCCGTGCTGT TCCTCGATCT GGATGGCTTC AAGAAGGTGA ACGACACGGC TGGCCACGAA GCGGGCGACC ACCTGCTGCG CATCGTCGCG CAACGGCTGT CGGCCTGCGT GCGCCAGAGC GATACGCTGG CGCGCCTCGG CGGCGATGAG TTCGTCGTGC TGCTCGACAA TGTGCGCTCG TTGGGGGAAG CGGAGCGCTT GGCCAAGCGC ATCGTCCATT CGATCGCGCA GCCGTTCTCG ACCAGCGGCA CGGAGTACTA CCTGGGCGCG TCGATCGGCA TCGCGCTGTA CCCGGAGCAC GGCAACGACG CCGCCACGCT GCTGCGCTGT GCGGATGCCG CCATGTACAA CGCCAAGCAG AACGGCCGCA ACCAGCATCG CGTGTACACC GCGCGCCTGT CGCAGCGGGC GCAGCGGCGC TTCCAGCTGG AATACCACCT GCGCCGCGCG CTGACGGCGG GCGAGCTGTC GTTGCGCTTC CAGCCTATCG TCGACGCCAC ATCGATGGAC ATCGTTGGCG CTGAAGTGCT GCTGCGGTGG CACAGCACCG AACTGGGCGA GGTGTCCCCC GCCGAGTTCA TTCCCGTGGC GGAAGACGCC GGGCTTATCG GCGACATCGG CGAATGGGTG CTGGCGCAGG CGTGCCGCCA GGCTGCGCAT TGGCGCGCCA CCTGCATGCC GGAGTTCTTC GTGGCCGTGA ACCTGTCGCC GCGCCAGTTT GGCGAGGGAC TGGTGCCGAC CATCTCGCGC TGCCTGACCG AAGCTGGATT GCCCGCCAGC GCGCTGGAAA TGGAGATCAC CGAAGGCCTG CTCATGCGCG ACACGGCCGC AGTGATGCCG ATGCTCGATG CGCTCACGGC CCTGGGCATT CGCATCTCGA TCGATGATTT CGGCACGGGC TATTCGTCAC TGTCGTATCT GCAACGCTTC CCGATCGACA ACCTGAAGGT GGATCGCTCG TTCGTCTCGG GCATTCCGCG CCATCGCGAT TCGGTGGTGA TCTCGCGTGC CGTGGTCGCG ATGGCCGCGT CGCTGGACAT GACCGTCACG GCAGAGGGTG TCGAGACGCT GGAGCAGGCC GAGTTCCTGC AAGCCGCGGG GTGCGACAAG TTGCAGGGCT TCCTGTTCGG CCCCCCGATG ACGGCTGCCG CCTACGAGTC ACGGCTGCGC CGCGACCGTT CCGCGCGGGC CTAG
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Protein sequence | MVDILKKNPD MDATSAERPD RPGPDVIDQD SRRPLPLADD RYEALVRQMP DALYIVADDI IVFVNEAGVR LFGAQTARDI VGHELDEFVH DNSMHLARQR REWMVSHGAG LPPVEQTLLR CDGTPVEVEV LSAPVQLGWR TAIQVVARDI TQRKQAEQAL RESEANYRAL AAETARAKEL LRCEKTVLEL SSRNVPLPDL LAEVCRLVEA LLDDGAMCSV LLSADGEHIT QAVAPSLPCT LSQVLVGIAI GPSVGSCGTA MFLNKTVVVE DIDADPLWDG YRDIVAPLGL RACWSTPIRG DNAQMIGAMG IYYDTPRAPT RDAMGLLDGI TDIIGVAVQK AHIARDLRES EERYRLAVDN LTEGIVVQTA DGTILACNPS ARRILRAGSV SPVGTSHLAL MRRSLREDGS EIPVNERPTR VVLATGRPLL GLTVGLELVD GDVVWVHENV LPIVRPGDNT PSAVLISFND IGPARAAQQQ LTFLAQRDAL TGLYNRAYFS QRMQAVMEQA ASQANEGHQV AVLFLDLDGF KKVNDTAGHE AGDHLLRIVA QRLSACVRQS DTLARLGGDE FVVLLDNVRS LGEAERLAKR IVHSIAQPFS TSGTEYYLGA SIGIALYPEH GNDAATLLRC ADAAMYNAKQ NGRNQHRVYT ARLSQRAQRR FQLEYHLRRA LTAGELSLRF QPIVDATSMD IVGAEVLLRW HSTELGEVSP AEFIPVAEDA GLIGDIGEWV LAQACRQAAH WRATCMPEFF VAVNLSPRQF GEGLVPTISR CLTEAGLPAS ALEMEITEGL LMRDTAAVMP MLDALTALGI RISIDDFGTG YSSLSYLQRF PIDNLKVDRS FVSGIPRHRD SVVISRAVVA MAASLDMTVT AEGVETLEQA EFLQAAGCDK LQGFLFGPPM TAAAYESRLR RDRSARA
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