| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0463 |
|---|
| Symbol | |
|---|
| ID | 6288976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 495263 |
|---|
| End bp | 496966 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642624028 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001898050 |
|---|
| Protein GI | 187927563 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCG TGCAGAGTGC ACCGAACGCG CCCGTCGGGC GTGTGCAGCC CGCGCCCATG
ACGAGGGAGG AGAAGAAGGT CATCTTTGCC TCGTCGCTGG GGACGGTGTT CGAGTGGTAC
GACTTTTATC TTTACGGCTC GTTGGCGGCC ATCATCGCCA AGCAGTTCTT CTCGGGCCTG
GACCCCACGG CGGGTTTCAT CTTTGCCCTG CTGGCCTTTG CCGCCGGCTT CCTGGTGCGC
CCGTTCGGCG CGCTGGTGTT CGGCCGTCTG GGCGACATGA TCGGGCGCAA GTACACGTTC
CTGGTCACCA TCGTCATCAT GGGTACGTCG ACGTTCATCG TCGGCCTGCT TCCGTCGTAC
GGCACGATTG GCGTTGCTGC GCCGGTCATC CTGATCGCGC TGCGCATGCT GCAAGGTCTG
GCACTGGGCG GTGAGTACGG CGGCGCCGCC ACGTATGTCG CCGAGCACGC CCCGCACGGC
CGCCGCGGTG CCTACACATC GTGGATCCAG ACGACGGCTA CGTTGGGCCT GTTCCTCTCG
CTGGTCGTCA TCCTGGCCGT GCGCGAACTG ACCGGCAAGG CGTTCGACGA CTGGGGCTGG
CGCATCCCGT TCCTGGTCTC GATCCTGCTG CTCGCCACGT CGGTGTACAT CCGCCTGTCG
ATGAGCGAAT CGCCCGCATT CCAGAAGATG AAGGCCGAAG GCAAGACCTC CAAGGCCCCG
TTGACAGAAG CATTCGGCCA ATGGCGCAAC CTGAAGATCG TCATCCTGGC GCTGCTCGGC
CTGACCGCCG GCCAGGCTGT GGTGTGGTAC ACGGGCCAGT TCTACGCACT GTTCTTCCTC
ACGCAGGTGC TGAAGGTCGA CGCATTCACG GCCAACGTGC TGATTGCGGT GGCGCTTGCC
ATCGGCACGC CGTTCTTCGT GTTCTTCGGC TCGCTGTCGG ACCGCATCGG TCGCAAGAAG
ATCATCATGG CCGGCTGCCT GCTGGCGGTG CTGACCTACT TCCCGCTGTT CAAGGCGCTC
ACGCACTACG CCAACCCGGC GCTGGAGCGC GCCCAGCAGA CCGCGCAGAT CACCATCACG
GTCGATCCGA AGGAGTGCTC GTTCCAGGGC AGCCCGATCG CCCGCGAGGT GGACTTCCGC
TCGTCGTGCG ACATCGCCAA GCGCACGCTG GCGCAGTCGT CGGCCAGCTA CGAGACGGTC
GAAGGCCCGG CCGGCACGGT CGCATCGGTG TCGATCGCGG GTAAGCAGAT CACCTCGCTC
AACGCCACCC GCACGGCAGA CGGCCAGAAC TTCGACGCCG ACAGCAAGGC CAAGATCGCC
GACTTCAAGA AGCAGGTGAG CGAGTCGCTC AAGGCGGCCA ACTACCCGGC CAAGGCCGAT
CCCGCCCAGA TGAACACGAT CATGGTGCTG GTGATCCTGG TGATCCTGGT GATCTACGTG
ACCATGGTCT ACGGCCCGAT CGCGGCAATG CTGGTGGAGA TGTTCCCGAC GCGCATCCGG
TACTCGTCGA TGTCGCTGCC GTATCACATC GGCAACGGCT GGTTTGGGGG CCTGCTGCCG
ACCATTTCGT TCGCCCTCGT GGCCCAGAAC GGCAATATCT ATCACGGTTT GTGGTACCCG
ATCTGGATCG CGGCCATCAC CTTCGTGATC GGTGTGCTGT TCGTGCGCGA GACCAAGGAT
GTGGATATTT ATCGCAACGA CTAA
|
|---|
| Protein sequence | MATVQSAPNA PVGRVQPAPM TREEKKVIFA SSLGTVFEWY DFYLYGSLAA IIAKQFFSGL
DPTAGFIFAL LAFAAGFLVR PFGALVFGRL GDMIGRKYTF LVTIVIMGTS TFIVGLLPSY
GTIGVAAPVI LIALRMLQGL ALGGEYGGAA TYVAEHAPHG RRGAYTSWIQ TTATLGLFLS
LVVILAVREL TGKAFDDWGW RIPFLVSILL LATSVYIRLS MSESPAFQKM KAEGKTSKAP
LTEAFGQWRN LKIVILALLG LTAGQAVVWY TGQFYALFFL TQVLKVDAFT ANVLIAVALA
IGTPFFVFFG SLSDRIGRKK IIMAGCLLAV LTYFPLFKAL THYANPALER AQQTAQITIT
VDPKECSFQG SPIAREVDFR SSCDIAKRTL AQSSASYETV EGPAGTVASV SIAGKQITSL
NATRTADGQN FDADSKAKIA DFKKQVSESL KAANYPAKAD PAQMNTIMVL VILVILVIYV
TMVYGPIAAM LVEMFPTRIR YSSMSLPYHI GNGWFGGLLP TISFALVAQN GNIYHGLWYP
IWIAAITFVI GVLFVRETKD VDIYRND
|
|---|
| |