| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0108 |
|---|
| Symbol | |
|---|
| ID | 6286548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 126251 |
|---|
| End bp | 128245 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642623679 |
|---|
| Product | Carbamoyl-phosphate synthase L chain ATP-binding |
|---|
| Protein accession | YP_001897703 |
|---|
| Protein GI | 187927216 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC CGCATGCCGC CTTCCGCTCG ATCCTCATCG CCAACCGGGG CGAGATCGCT
TTGCGCATCA TGCGCACGGC GCGTCGCCTT GGCATGCCCA CCGTTGCCGT GTATTCCGAC
GCTGACCGCG ATGCGCCGCA TTGCCGCGCG GCCGATCTGG CGTTGCCGAT CGGCGCGTCG
CAACCGCAGG CGTCGTACCT GAACGTTGCG GCGTTGCTGG AGGCCGCGCG CAAGTCGGGT
GCGCAGGCGG TCCATCCGGG TTACGGCTTC CTTGCAGAGA GCGATGCCTT TGCCGGCGCA
TGCGCGGATG CCGGCCTCGT CTTCATCGGG CCGCCTGCGG GGGCCATCCG AGCGATGGGC
AACAAGGCTG GCGCCAAGCG CCTCATGGAA GCGGCCGGCG TGCCGTGCGT GCCCGGTTAT
CAGGGCGAGG ACCAATCCGC CACACGCATG GCGGACGAAG CGGCGCGCAT CGGCTACCCG
GTGATGATCA AGGCGGCCGC CGGCGGCGGT GGGCGCGGCA TGCGGCGTGT AGACCGGCCC
GAGGCGTTTG CGGCGGCGCT GCAGTCTGCC CGCTCCGAAG CGGAGAACGC GTTTGGCTCG
GGCGAGTTGA TCCTCGAGAA AGCTATCGTC GAGCCGCGCC ACATCGAGAT TCAGGTATTT
GCCGATGCGC ACGGCAATGT GGTCCACCTC GGGGAGCGCG ATTGCTCGGT GCAGCGCCGG
CATCAGAAGG TAATTGAGGA GTCGCCGTCG CCGGCCGTGT CGCCCGAGTT GCGCGCGCGC
ATGGGCGCGG TGTCGGTGGC GGCGGCGCGC GCGATCGGCT ACGTGGGTGC GGGCACGCTG
GAATTCCTGC TCGCCCCGGA CGGCGCGTTC TACTTCATGG AGATGAACAC GCGCCTGCAG
GTCGAGCATG CGGTGACCGA AGCGATCGTG GGCGTCGATC TGGTCGAGTG GCAGTTGCGC
GTGGCGCTGG GCGAGCCGTT GCCGCTTGCG CAAGACGCCA TCGACGCCCG CCGTGCACAA
GGCGGCCACG CCATCGAAGT GCGTCTGTGC GCAGAAGACC CGCAGCAGAA TTTCCTGCCG
CAAAGCGGCA CCGTCGCGCG CTGGCGTGCA CCCGGAGACG TGCGCACGGA CCATGCGTTG
GCCGACGGGC TGGTTGTCTC GCCGTACTAC GATTCGATGC TCGCCAAGAT CGTCGCGCAC
GGCACCGACC GCGCCGATGC ATGCCGGCGT CTCGCGCACG CCCTGGACGA TTGCCTGCTG
CTTGGCTTGC CGACCAACCG GGCGTTTTTG CGCGATTGCG TGGCGCATCC GGCGTTCCTT
TCCGGCGATG TGTCGACCGC GTTCATCGAC CGGCATTTCC CGGCGGCGAT GCGTCAGGCG
GCCGTACCCG ATGCAGCGGT TTGCCAAGCG GCTGCCGTGC TGCTCACGTA CCTGCGCCAG
GACACCGCAC GCCGCTATCC CGCAGAGCTG CATGGCTGGG CCAGCAGCCG CACGTATCCC
ACGCTGTGCC GCTTCACGCT CGACGGTGAA GCCATCGACA TGCGCGTGCG TGCGCTCGGT
GCGCAGCAAT GGGAGCTGGC CTGGGACGGC GGGGCCACGC AGGTGGCGGT TGTGTCGGCG
GGCGACGGTC GCGTCACGCT CGCGCTGGGC GACGCATTCC ACGCGGTGGA TTACGCCGTC
ACGGCCAGCG CTTGCCACTT CGTGCTGAAT GGCATCGAAC ACACCGCCAT CGACACCACC
TACGCCAAGG CGGAGCGCAG CGGCGCACAA ACTGGCAGCG GCCGCATCAG CGCACCGATG
AACGGTCGCG TGGTTGCCGT ACACGTGGCC GAAGGCGAGG CCGTTTGCGC CGGTCAGGTG
CTGCTGGTGG TCGAGGCGAT GAAGATGGAG CACAGCATTG CCGCGCCGCT CGCAGGCGAG
GTGAGGGGGC TGTTCACCCA GGTCGGCGCC CAGGTTGCGC CCGGTGGGTT GTTGATGGAG
ATTGCCGCGG CCTGA
|
|---|
| Protein sequence | MTAPHAAFRS ILIANRGEIA LRIMRTARRL GMPTVAVYSD ADRDAPHCRA ADLALPIGAS
QPQASYLNVA ALLEAARKSG AQAVHPGYGF LAESDAFAGA CADAGLVFIG PPAGAIRAMG
NKAGAKRLME AAGVPCVPGY QGEDQSATRM ADEAARIGYP VMIKAAAGGG GRGMRRVDRP
EAFAAALQSA RSEAENAFGS GELILEKAIV EPRHIEIQVF ADAHGNVVHL GERDCSVQRR
HQKVIEESPS PAVSPELRAR MGAVSVAAAR AIGYVGAGTL EFLLAPDGAF YFMEMNTRLQ
VEHAVTEAIV GVDLVEWQLR VALGEPLPLA QDAIDARRAQ GGHAIEVRLC AEDPQQNFLP
QSGTVARWRA PGDVRTDHAL ADGLVVSPYY DSMLAKIVAH GTDRADACRR LAHALDDCLL
LGLPTNRAFL RDCVAHPAFL SGDVSTAFID RHFPAAMRQA AVPDAAVCQA AAVLLTYLRQ
DTARRYPAEL HGWASSRTYP TLCRFTLDGE AIDMRVRALG AQQWELAWDG GATQVAVVSA
GDGRVTLALG DAFHAVDYAV TASACHFVLN GIEHTAIDTT YAKAERSGAQ TGSGRISAPM
NGRVVAVHVA EGEAVCAGQV LLVVEAMKME HSIAAPLAGE VRGLFTQVGA QVAPGGLLME
IAAA
|
|---|
| |