| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0084 |
|---|
| Symbol | |
|---|
| ID | 6288633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 95357 |
|---|
| End bp | 98572 |
|---|
| Gene Length | 3216 bp |
|---|
| Protein Length | 1071 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642623657 |
|---|
| Product | transcriptional activator domain |
|---|
| Protein accession | YP_001897681 |
|---|
| Protein GI | 187927194 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2909] ATP-dependent transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACTCCG CTCCCACGCT CTCCAAGATC AACCGCCCGC AGTCGGGCGG CATCGTGCTG
CGCCCGCGTG TGCTGAACCG CATCGGGCGC GGCTTTGCGG CCAGCCCCAT CGTGTGGGTG
GCCAGCCCTG CCGGTTCGGG CAAGACCAAA CTGGCGATCA GCTATCTGGA AGCGAGCGGG
CTGCCCGCCA TCTGGTACGA GGTGGACGCC GGCGACATGG ACCCGGCCAG CTTTTTCCGG
ACCTTCGGGC AAGCCTGCGC TGCGCATCTT GGTGCAGACA GTGCCACCCA GCCGCCGCTG
TTCAGCCCCG ACCATCTGTT TGACCTGGCA GCGTTTGCGC GGCGTTACTT CCGGGCCTTG
TTCTCGGGGC TACCAGAAGC CACCCTGCTG GTGCTTGAGA ACGTGCACGC AGCGGAGGCC
GAGCCCAGCT TCAAGGGAAT CCTGCAAGCC GCGTTGGCCG AGGCATCCGA GCACGTGCGG
ATTCTGGTGT TGAGCCGATC CGCGCCGCCG CCTGAGTTGG CGCGGCTGCA AGCCAATCAG
CAACTCGCGC TGGTGGACTG GCAACACCTG CGGCTGACCG AGGAAGAAAC CGGCGCCATC
CTGGCCGGCC ACCCCGCCGC GCTGGCAACG CTGGAACAGC GCCCCGATGC AGAGCGCGAG
CTTGCCGGCG GGCTGCATGC GCGCAGCGGC GGCTGGGTAG CCGCCGTGGT GTTGCTGCTG
GACCAGATTG GCCGCGTGGG CAGCTATGAC GTCGACCGAC TGGACTCGCG TGAAGTGCTG
TTCCCGTATT TCGCGCAGGA GATGATCGTC GCCGCGTCGC CCGAGCTGCG CCGCTTCCTG
CTGTGCACGG CGATCCTGCC GAACTTCGAT CTGGCCGAGG CTCGCCAACT CACCGGCAGC
ACGGATGTCG ATCACTTCGT TACCTCCGCG CATTGCCAGC AGTACTTCAT CGACCAGTTC
GGCAGCGGGG CAGGGGCGTC GTACCAGTAC CACGCGCTGT TTCGCGAATT CTTGCTGTCA
CGGTTACCCG ATGCATTTTC CGCTGACGAG CGGCAGCAGC TGACAGCCAA CGCCGCCGCC
TTGCTGGAAG CGCGCGGCGA GCTTGCCGGC GCCGGCGAAT TGCTGGCCGA TGCCGGGCTG
ATGCCGCAAC TTGCGGCACT GGCGCTGCGC CATGCACCAA TGGTTCTCCA GCAAGGCCGC
TATCGCACGT TGAGCGACTT GCTTGGGCAA CTCCCCACCG CCGTGCTCAA TGCCGACCCC
TGGCTGCTGT TCTGGGCCGG CACCAGCCGC ATGGCGCTGG ACCCGGGCAA TGCACGCCTC
TACTTCGAGC CGGCGTTGAC GCTGTTCCAG GCGCATGACA ATGCCGCTGG CTGTTACCTC
GCCTGGTCTA GCATCGTCGA TTGCATCTAT TTCGAATCCC GCGATTACCG GCCGCTCACG
CATTGGCTGG AAATGCTGGA CACGCTGCGC GCGCGTTACC CGGCGTTTCC CGATGCGCAA
ATCGAAGCGC GCGTGCTGGC CAGCGTGCTC GCGGCGTTGG CGTTTCACGC CATGGGCCAT
GCGGATAGCC GACATTGGAC CGACCGCGCC CTCGTCTTCA TCGGCACGGT GGACGTGCAG
ACGCAAGCCT CGCTCGGCTT CATGCTGACG GTCTATCACC TGTGGACGGG CGATCTTGAG
CGTGCGCGCG TAGTGCTCCA GCTCATGCGG GCGGCCGTGG CATCGCCGCA GACCAGCGAC
CTGCTGCGCA CCACGATCCT CACCACCGAG GCGATGGGCT ACTGGTTCTT TGCCGAGAAC
GATGCATGCA TCGCCGTGGT AGAGCAAACG GAAGCCTTGA TGCACGCCAG CGACATCTAC
CTGTGGAAGC ACGCGCTACT GAATCATGGG CTGGCGGCGG CTATCTCCGC CGGCAATGTG
ATGGAGGCGG AATCGTTCCG GGCCAAGCTG GCGCAAGACA TTCACATGGG CCGGCCACTC
GATCAGGCCA TGCACCATTT CGAGCGCGGG TGGCTGGCCT TGCAGCAAGA CCGCTTGCGC
GAGGCGGAAC TCATGGTTGA GTTCGGGCGC AATGGCTTTC GGTCACTCAA CTTCCGCTTC
GGCGTGGCGT TCACCCTTGC CACCAGCGCA TATATCGCGC ACTTGCTCGG CCAGGCAGAA
CAGGCCGACA CGTTTGTCGA AGAAGCAGAG GCGCTGTCGC GCGACGTCGA TAGCAAGGTG
GCGCTCTGCC ACACGTTGAT GGTGCGCGCG GTGATGGCGT TGGATCGTGG CGCACCAACC
AGCCCATGGC TGCCGGAGGC GCTGGCGCTG GGCCGACGCT TCGGCATCAC GAATTTCCCT
GGCTGGCATG ACCCGATGGT CGCCCGCCTG GCGGCCCATG CGTTGGCAAC CGGCATTGAG
ACGAACTACG TGACCGCACT GGTCCGCAAA CGCCGTCTAC AGGCGCCAAC TGCGCGCGTG
AAGCACTGGC CGTGGGAGAT TGAACTGCGC GTGCTCGGGG CTTTCAGCGT GAGTTGCTCA
GGTGAGCCGC TAGCGCAGAG CGGCAAGGGC AACCGGCGCA CGCTGGACAC GCTCAAGGCG
ATCGTCGCGT ATGGGGGACG GGAAGTCGCC ATCGACCATC TCTCAGCCGC GTTGTGGCCC
GACGCGGATG GCGACAGCGC CAAAGGTGCG TTCGACGTGG CCATTCACCG GCTGCGCAAA
CTGCTCGGCA ATGCCGATGC CATCGTGGTC AGCAACGGCA AGGTTGGGCT CAACATGCAC
TTGTGCGGGC TCGATCTCTG GACGTTCCAG GCGCATCGCC AAATCGCACT CGATCTGGCA
AAAACACCTG ACCCCGATTC CGACACGCTA TTGACAGCCG CGTTGGACAT GCTGGCCGCC
TACACCGGGG ACTTCCTCGC CGACGAGGCC GAGCAACCAT GGCTGCTTCC GCAGCGGGAA
CGCCTGCGTG CCGAACTGGT GCGCACCGTG CTCACCGTGG GGGAAAAGCT GGAAGCCCTC
AATGCACCAA CGTCGGCAAC GACTGTGTAT CAGCGCGCGC TTCGCCTGCA CCCGACAGCA
GAAGGCATCT GCCGTCACCT GCTGGAATGC CTGCGGGCAG AAGGCCGGTC TGCTGAAGCC
AGCGCGTTCT TCGCCGAATG GCAGCACACA CTCAAGGTGG TTTATGGCGC CGCGCCATCT
CCATCTTTAG TGGCGATGCT GGACTGGATA CGATAG
|
|---|
| Protein sequence | MNSAPTLSKI NRPQSGGIVL RPRVLNRIGR GFAASPIVWV ASPAGSGKTK LAISYLEASG
LPAIWYEVDA GDMDPASFFR TFGQACAAHL GADSATQPPL FSPDHLFDLA AFARRYFRAL
FSGLPEATLL VLENVHAAEA EPSFKGILQA ALAEASEHVR ILVLSRSAPP PELARLQANQ
QLALVDWQHL RLTEEETGAI LAGHPAALAT LEQRPDAERE LAGGLHARSG GWVAAVVLLL
DQIGRVGSYD VDRLDSREVL FPYFAQEMIV AASPELRRFL LCTAILPNFD LAEARQLTGS
TDVDHFVTSA HCQQYFIDQF GSGAGASYQY HALFREFLLS RLPDAFSADE RQQLTANAAA
LLEARGELAG AGELLADAGL MPQLAALALR HAPMVLQQGR YRTLSDLLGQ LPTAVLNADP
WLLFWAGTSR MALDPGNARL YFEPALTLFQ AHDNAAGCYL AWSSIVDCIY FESRDYRPLT
HWLEMLDTLR ARYPAFPDAQ IEARVLASVL AALAFHAMGH ADSRHWTDRA LVFIGTVDVQ
TQASLGFMLT VYHLWTGDLE RARVVLQLMR AAVASPQTSD LLRTTILTTE AMGYWFFAEN
DACIAVVEQT EALMHASDIY LWKHALLNHG LAAAISAGNV MEAESFRAKL AQDIHMGRPL
DQAMHHFERG WLALQQDRLR EAELMVEFGR NGFRSLNFRF GVAFTLATSA YIAHLLGQAE
QADTFVEEAE ALSRDVDSKV ALCHTLMVRA VMALDRGAPT SPWLPEALAL GRRFGITNFP
GWHDPMVARL AAHALATGIE TNYVTALVRK RRLQAPTARV KHWPWEIELR VLGAFSVSCS
GEPLAQSGKG NRRTLDTLKA IVAYGGREVA IDHLSAALWP DADGDSAKGA FDVAIHRLRK
LLGNADAIVV SNGKVGLNMH LCGLDLWTFQ AHRQIALDLA KTPDPDSDTL LTAALDMLAA
YTGDFLADEA EQPWLLPQRE RLRAELVRTV LTVGEKLEAL NAPTSATTVY QRALRLHPTA
EGICRHLLEC LRAEGRSAEA SAFFAEWQHT LKVVYGAAPS PSLVAMLDWI R
|
|---|
| |