| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5448 |
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| Symbol | |
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| ID | 8016020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012851 |
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| Strand | + |
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| Start bp | 47606 |
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| End bp | 49339 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644827279 |
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| Product | integrase family protein |
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| Protein accession | YP_002978479 |
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| Protein GI | 241258213 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACT CAAATCAAGC CATCGATGTA ACCCGTGCCC AGTACGCCGC CATACGCGCC
TGGCTGCAGG GCGTGGCGGC GGTCGACGTG GCCGACCGTT GGCTGTCGGC CGATCCCGAC
ATCGAGTGGA CGGAAAGCCT GGCCCTGCGT GCGCTACGCG CGATTCGCGC CACGCTCGCG
CAGCTGGCGC TGCGTCATGA ACAGGAAGCG CTGGCCAGCC TGTTGGCCAC CGGGCCGCGC
TCAACCACGG CGTTGAACCA GGTGCTCGCA GGCCTGCGGC GCCTGGAAGA ATTGGGTACG
CCGGCACCGG CGACCAAGCA CGACGTGCGT TTGTGGTTTG CTGCACCACT GGCACGCCGG
CTGCAGGCCG CCGGCGTGGC CACGCTGGGC GAGCTGATGA CGCTGGCCAA CGATCTGGGC
CGAGCCTGGT GGCGCCGTGT GCCACGCATC GGCCCGGCCG CTGCGGCGAC CATTGTGCGC
ACCCTGGCTA CAGCTGAAGC GACACTAGGG CGCCTGGGCG CCCACGTCAC TGGCGTATCG
TTGCCTGCCG CGCTCCCCTC GCCCGAGCTC GTGCCGCACG CCGGGCGCGC GGTGCCGCTC
GAAGCGATCC GCCTGCCGGC GGCCCTCGAT GGCCGCGCCG GCATCAACCG GGGCGACATC
AACCGCTGCC GCATCGACGC ACTCAACGAC TACCAGGCAA TCCAGACCTG GTTGTCGCTG
TGGCCAGCCG GTGGTCACAC CTGGCGCGCG TATCGCAAGG AAGCGGAACG CTGCTTGGCC
TGGGCCATCC TGGAGCGCGG CAAGGCCTTC AGCGATCTGC TGACCGATGA TTGCCTGGCG
TACCGAGCCT TCTTGGCACA GAAGGATTTC GGGCCACGCT GGAGCGGGCC GCAGGTCGCA
CGCACACTGC CGGGCTGGCG GCCGTTCCAA GGGCCGCTGT CGACGCGCAG CCGCGCCTAT
GCTGAGCAGG TCCTGGCGGC CCTATGCGAG TGGCTGGTTG GCCGCCGCTA TCTGGACTCG
AACCCATGGG ACGGCATGCC AGCGCTGCGC GTGGCTGCAC TCGATATCGA CATCGAGCGC
GCGGTGCCGC CGGCGGTCTG GCAAGCGCTG CAGCCATGGC TAGACGCGCA GGCCGCCGAT
GACGTGCGCT GGCGCACCAT CCGCGCCGCC GTGTTGCTGT TGCACGATTC CGGCATGCGT
GTGTTCGAGG CCGCCGGCGC CGAACGATCG GGCCTGCGGC CCGCCGGCGG CGATGGCCCG
CTGTGGGGCG AGCTACGCAT CGTCGGCAAG CGAACCAAAA CGCGGATGGT GCCAATCAGC
CGCCGCGCAC ATGACGCCCT GGTGGCGCAC TGGCGAGATC TGGGGGACGA ACACGCTGCA
GAGGGCCCGC TGCTGGCACC TGCCGAGCCC TGCACCAGCC CGCGTGCGCT GGCCAAGGCC
GCCGACGGCC GCCGCGGCTA CAGCGACCGA GGGCTGCGCC ACCTGGTCAC TCGCGCCGGC
GAGGCTTTCC GTGCGCACCT GGAGCAAACC GACCCAGATC TACGCGCCCA GGCAATCCAT
CTGCATCCCC ATGCGTTCCG GCACGCTTTC GGCACTGCGG GCGCCGAGGC CGGCGTGCCG
CTCGATGTGA GGCAAAGCTA CCTGGGGCAC GCCTCGCCTG CGACTTCGGC GATCTACGAC
AAGGCCGGCG CCCGCCGGCG CCAACGCGAA GTCGCCAAGC TGTTCAGCGT CTAG
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| Protein sequence | MKNSNQAIDV TRAQYAAIRA WLQGVAAVDV ADRWLSADPD IEWTESLALR ALRAIRATLA
QLALRHEQEA LASLLATGPR STTALNQVLA GLRRLEELGT PAPATKHDVR LWFAAPLARR
LQAAGVATLG ELMTLANDLG RAWWRRVPRI GPAAAATIVR TLATAEATLG RLGAHVTGVS
LPAALPSPEL VPHAGRAVPL EAIRLPAALD GRAGINRGDI NRCRIDALND YQAIQTWLSL
WPAGGHTWRA YRKEAERCLA WAILERGKAF SDLLTDDCLA YRAFLAQKDF GPRWSGPQVA
RTLPGWRPFQ GPLSTRSRAY AEQVLAALCE WLVGRRYLDS NPWDGMPALR VAALDIDIER
AVPPAVWQAL QPWLDAQAAD DVRWRTIRAA VLLLHDSGMR VFEAAGAERS GLRPAGGDGP
LWGELRIVGK RTKTRMVPIS RRAHDALVAH WRDLGDEHAA EGPLLAPAEP CTSPRALAKA
ADGRRGYSDR GLRHLVTRAG EAFRAHLEQT DPDLRAQAIH LHPHAFRHAF GTAGAEAGVP
LDVRQSYLGH ASPATSAIYD KAGARRRQRE VAKLFSV
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