Gene Rpic12D_5436 details

Gene Information

• Locus tag: Rpic12D_5436
• ID: 8016008
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia pickettii 12D
• Kingdom: Bacteria
• Replicon accession: NC_012851
• Strand: -
• Start bp: 40016
• End bp: 40582
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644827267
• Product: type IV pilus biogenesis protein PilP
• Protein accession: YP_002978467
• Protein GI: 241258201
• TIGRFAM ID: [TIGR03021] type IV pilus biogenesis protein PilP

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAGAA CCCTCATGAA TGTCTTGGCG AGTGCGCTGC TGGCCGGTAT TGCGATTTCC 
GCTCGCGCGC AGAACGCTTC AGCACCGCAA GCTTCTCTGG CCAGTGCCGG CGCACAGCAA 
GGCACGTCGT CAGCTGTCCG CCCGGCCGCC GCCGCAGGCG CGCAGCTCGG TCAAGGTGCA 
CGCAGCTCCG AGTCCGATGA GTTGGTCAAC CTGCAGAAGC AGATTCCGCT GTGGAAAGCA 
CGTGCCGAAA TCGCCAAGTA CCAGGCCGAG GTCCGTAAAT CGGAGCCGGC CGTGGGATTG 
GCCGCGCCGC TGCCGGCAGC CACCATGGCA GCAGCACAGG GGGCCGTCCC CGCAGCTGCA 
CCGGCCGCAT CCGCGCTTGC TGCAGGGCCG CGCGCGATTT CGCTGCACGC CTACGACGGC 
AAGTACACCG CGATGGTGGA GGTAAACGGC CAGGCGATTC CTGTACGCGC TGGCGACACG 
CTTGACGGCG GCTGGAAGGT CGCTGGCGTT GATGACGCGG GCATCAAGAT CGTCAACGGC 
AAGCGTGTGC GTATTCTGAG GCCCTAA 

 

Protein sequence

MNRTLMNVLA SALLAGIAIS ARAQNASAPQ ASLASAGAQQ GTSSAVRPAA AAGAQLGQGA 
RSSESDELVN LQKQIPLWKA RAEIAKYQAE VRKSEPAVGL AAPLPAATMA AAQGAVPAAA 
PAASALAAGP RAISLHAYDG KYTAMVEVNG QAIPVRAGDT LDGGWKVAGV DDAGIKIVNG 
KRVRILRP