Gene Rpic12D_5422 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5422 
Symbol 
ID8015994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012851 
Strand- 
Start bp29647 
End bp30198 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content63% 
IMG OID644827253 
ProductLytic transglycosylase catalytic 
Protein accessionYP_002978453 
Protein GI241258187 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.984316 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGGCT CTGCATTCCT GCTCGTCATG GCGCTATTGC CGGCGCTGGC CTTTGCCGAC 
TGTATTGACG AAGCCGCCAG GTTCCACCAG GTCGATGCGC GCTTGGTGCG CGCCATCGCC 
CAGGTGGAGT CGCGGATGCA CGCGGACGCC GTTGGCGCCA ACAGCGATGG CAGTACCGAC 
ATCGGTCTCA TGCAGATCAA CTCAAGCTGG CTACCCAGCC TGGCGCGCTA TGGCATCACC 
CGGGCGCATC TGTTTGATGC TTGTGTCAAC GCCTACGTAG GAAGTTGGAT TCTGTCTCGC 
AATATCCAGC AGCTCGGCCT CACGTGGGAT GCCGTCGGGG CCTACAACGC CAAGAGCCCG 
GCAAAGCGTC TCGCCTACGC GCGAAAGGTC TATCAGGCGT TGGCGACGGC CAGCTCTACG 
CCGAGCCGCG CAATTGCCAA CCCAGTAGCC TCAGTACGGC CTGTGGAGGC GCCGCGTGCT 
GCTGCGCGCC GCCTGCAGAC GAACACGTCA TCGGACATCA CCATCGTCTC CTGGGAGCCA 
CCCAATGAAT GA
 
Protein sequence
MKGSAFLLVM ALLPALAFAD CIDEAARFHQ VDARLVRAIA QVESRMHADA VGANSDGSTD 
IGLMQINSSW LPSLARYGIT RAHLFDACVN AYVGSWILSR NIQQLGLTWD AVGAYNAKSP 
AKRLAYARKV YQALATASST PSRAIANPVA SVRPVEAPRA AARRLQTNTS SDITIVSWEP 
PNE