| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5418 |
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| Symbol | |
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| ID | 8015990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012851 |
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| Strand | - |
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| Start bp | 25155 |
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| End bp | 27833 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644827249 |
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| Product | Type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_002978449 |
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| Protein GI | 241258183 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGAACA ACCCTACGCT CTCGCCGTTC GACCGAGAAT CGCTCACACA GATCGAGGAA
CGCCTAGCAG GCCGGAGGCG ATCGACCGCT GAGCTCGTGC CGTGGCTATT CAAGTACAGC
GATTTCATGA TCGCCAACAA GGATTCAGCC TTGATGGTGT CCTTTGAATT CACGGCACCT
GATTCCAACA GCATTTCCAT GACGGTGATG CGTGAACTTT ACGAGCACGT CGCCGCCAGC
CTGGGCAACC TGTCGCGCTA TCCCATCTCG CTCTGGTGGA CGGTCCATCG GCGCTTGGAT
TCGCGCTATG TCACCCTGCC CATGCCGGAC AAGGTTGCGC AGATGGTCGA CGACGATCGG
CACGCGAATT TCTTGGCCGA AGGCAACTAC GTCAACCGGC ATTTCGTCAC GTTCTCGCTT
CTTCCCCAGG TCGGGCTCGA CGCATTCGCC TCGCGCGTCA TGCATGGCGT TACGCATGAC
GACCTGTCGA TCCCGAGCGC GCTCTGGGAG GCCGTGCGCG CCACGTTTTC CGACCAGTAC
CAGTTCGCCT ACACGCAGTC CGAACTGGAG GCAGCTGTTG AAACCTTTGA ATCTATCCTG
CACGGCTTCG CTGCCGACAA CCCGCACATC AAAATGCGGC GTCTGGCCGG CAAGCGCCTC
GGCGGATTTA TGCACGCGGT TTGCTCCCCG CCAAGCGATC ACATCACTGA ACTGGACATC
CCGGAAACGC CGGCACTCGA CCAGGCGATG TGCGACACGG AAATTACGCC GGGCCACGAC
TACCTGCACT TCTACTCGAA CGGGCGCCAG CGATACGGCA TTGCAACGGG GATTCCGGGG
AAGCGGGACT ACTGGCCAAG CAATGCGTCG CCCAAGACCC TGGACGACCT CCTGAAGATC
AAGGGTGAGC TCACCATCAG CCACTGCTTC CGTGTGTCGT CACCCAGCGC AGCAAAGCGT
TTCATCGACA GTATCCGCAA GTACCACGAA GGCCAGCGCT TCGATGTGCG CCAGCTGCTC
GCGGCGACCC TGCGCGGGAC TGATATGGAC GCCAAGCCAG GGCGCCAGAA CAAAACGCGC
CTGAAGGCCG CCGAAGAGGC GAACACACGC GCCGGCAAGG TCGAAATGCT TGAGGAGATC
TACGGCTTCT ACAACTTCAC CGTCATTGCA TACTCGCCCG TGTTCGAGGA AACGCCGGCC
TCGAAGGGTC TTGCCGGCGA GCAGGCCTAC AAGAAAGCCG TGGCGACACA CAACGCCGTG
GAAGACGTTC TGCGCGCAGC CCAGTTCATA CCGGTGCGCG AGACTCTGCA CGCCATGTCG
GCGTTTGCGA CCACCATTCC GGGTATGTGG CGCGAGTGCG CGCGCTGGGC ATTTCTCGAC
ACCGAAGCCG TTTCCCGCTT GCTGCCGCTG CGCGGCGTCT CGCGCGGCTC AATGTTCAAT
GCGCATCTGT CCAAGCAGAT GCGCACACGG ATTCCGGCGC TGGCGGCGTT TACCACCGAA
TACGGTACGC CTTTCTGGTT TACCGCCTAC CTGATGGACC TTGGCCACAT GCTCATCTGT
GGCCGCTCGG GCTTCGGCAA GACCATCTTC ATGTTGCTGT GCGCGACACT GTTCCGGAAA
TATCCGAACG CGCGGCTGAT CGGCTTCGAC ATGAATTTGT CGATGCGCAT TCCGACTGTC
CTGCAGGGTG GGCGCTATCT GCAATTTGCG GCCGATGCCA ACACCGTGGC CGAAGAGGAG
CGGGCAACCT GCAATCCCTA TGTTCTGCTG GGTCATCTCC GCCATCTCAA GTTCCTGGTC
GACTGGACCG TGCTGCTGGC CAGCCAGCGA GGCTATCGGC CCACCACGGA CGATCGAAAA
GCCATCGAGA AGGCGATACG CGCAGCTGCT ACGCGCGACC CTCAATTCTG GCGTCTGCGG
TTCGTGCACG CCTCCCTGCC CAATGGCCCG CTGAAAAACG AGCTTGACCA GTGGGTGGGC
GAGGCGGTCG ACGCGCTCTA CTTCGATAAC GAACAAGACG GTTTCGACGA CACGCAGTGG
ACCTCGATTG CAACGGACAA GGTCCTCAAG GATCACGCCG TTGCGCGCCC GTTCCTCTCC
TACGCGACCT ACCGTATTCA GGACGAAATC GAGCAACGCC GGTTGCGCGG GGTCATCGCG
CCAACCGTCG TCATGCTCCC GGAAATCTGG TCGCTGCTCG ATGACAACCA GTTCGCCAAG
CAGATCGGTG AATGGATCGT GACCATGCGC AAGCTGCTCG GTTGCGTTTG GATGGACGCA
CAGACCCCCG AACAAGTCGC CAACTCACCG ATTTGGCCCG CCATCCGCGA CAACGTTCTG
ATCCGCGTCT TCGTGCCCGT CAAGGATTTC AAGCCGGATA CCAAGAAGGC TTACGAGGAA
AAGTTTGGTC TCACGCAGAC CCAGCAGGAC GCGATCAAGA AGCTCAAAGC CAAGCGCGAC
TACTTCATTA CCGAGGACGG CGGGATCTCC CGCAGCGTCT CAGTTCCCCT GCCTCCGCGC
ACGGAGGCCA TCCTGCGCTC CGAACTGCAG GCGCAGATCC TCTTCGATCG GCATATGCGT
TCCGGGGAGC CGGACTGGAA GGAGCGCTAC ATCGAGGAGG CCACTGCACA GATCGAAGCC
GACAAACTCA ACCTAGACGA CGAGGACCGC CATGCATAA
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| Protein sequence | MLNNPTLSPF DRESLTQIEE RLAGRRRSTA ELVPWLFKYS DFMIANKDSA LMVSFEFTAP
DSNSISMTVM RELYEHVAAS LGNLSRYPIS LWWTVHRRLD SRYVTLPMPD KVAQMVDDDR
HANFLAEGNY VNRHFVTFSL LPQVGLDAFA SRVMHGVTHD DLSIPSALWE AVRATFSDQY
QFAYTQSELE AAVETFESIL HGFAADNPHI KMRRLAGKRL GGFMHAVCSP PSDHITELDI
PETPALDQAM CDTEITPGHD YLHFYSNGRQ RYGIATGIPG KRDYWPSNAS PKTLDDLLKI
KGELTISHCF RVSSPSAAKR FIDSIRKYHE GQRFDVRQLL AATLRGTDMD AKPGRQNKTR
LKAAEEANTR AGKVEMLEEI YGFYNFTVIA YSPVFEETPA SKGLAGEQAY KKAVATHNAV
EDVLRAAQFI PVRETLHAMS AFATTIPGMW RECARWAFLD TEAVSRLLPL RGVSRGSMFN
AHLSKQMRTR IPALAAFTTE YGTPFWFTAY LMDLGHMLIC GRSGFGKTIF MLLCATLFRK
YPNARLIGFD MNLSMRIPTV LQGGRYLQFA ADANTVAEEE RATCNPYVLL GHLRHLKFLV
DWTVLLASQR GYRPTTDDRK AIEKAIRAAA TRDPQFWRLR FVHASLPNGP LKNELDQWVG
EAVDALYFDN EQDGFDDTQW TSIATDKVLK DHAVARPFLS YATYRIQDEI EQRRLRGVIA
PTVVMLPEIW SLLDDNQFAK QIGEWIVTMR KLLGCVWMDA QTPEQVANSP IWPAIRDNVL
IRVFVPVKDF KPDTKKAYEE KFGLTQTQQD AIKKLKAKRD YFITEDGGIS RSVSVPLPPR
TEAILRSELQ AQILFDRHMR SGEPDWKERY IEEATAQIEA DKLNLDDEDR HA
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