| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5412 |
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| Symbol | |
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| ID | 8015984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012851 |
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| Strand | - |
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| Start bp | 19841 |
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| End bp | 21184 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644827243 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_002978443 |
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| Protein GI | 241258177 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.525455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACGC CTGACCGCAA TGCGGCCCCC ATGACCAATG AGCCTGCCCC GCGCGTTCGT
GTGCGACGGG GGCTGGCCAA GACGATCTCC ATTTTCTTCG GTGCCACGAT TCTGTCGATC
GTGTTTGTGC GCTATTTCAC GCACCCGCGT GAAACGGCCG ACCAACGGGC ACGGCGCGAA
CAGCTCGAAC AACTGGCGAA GGAACAGCCG GCTTCGGGAG ATGCGCTTGC TCAGAAGCTG
GAGAATCAAT TCACGCGCGC ACAAACGGAG CATCCGGCAC CCGCGGCGCC GGCGGCGCCG
AAGACGCCGC CATCCGGCCC TGTGCCGAAC GGCATGGTAG GCGGCGCATC CGCGCCGGCC
GGCGTGCCGG CGGGTGCGCC TGGTTCCCAG GAAGGGCTGA CCCCGGAGCA GCGTCTTGCG
CTGCAGCGAG CCTCCCAGGA GACCGACACC ATGGCGGTGG TGTCCTATGG CGATCGCGAG
CAAGGCGCTG CAGCCAGTGC CGGCACCAAT CCGATTTCCG ATTACATCGC GTCGCTGCAG
CGTCAACAGG CCGACAAACG TACCGCGCCT GGTGAAGCTG GGACACCTGC CATTCAAGCG
CAGCTCGCCG CGCTTGCGGC GGCCAACAGC CAGAGCCAGA ACACGCCCGG TTCCGCAACG
AACGCGCGTC ACGTCGCGTG GCAGGGACAG CAGACGAACC AAGGCCAGAG CGCAACGTTG
ACCCCGCAAG CCGCCGAATC GCCGTTCATG GTTATGCCCG GCACGCCCAT CCCGGTTGTG
CTCAACCAAG GCGTCAACAG CGACATGCCC GGGCAGTACA GCGCGACCGT CGACCGGGAC
ATCTACGACA GCATCAATGG CTCATGCCGA TTGATCGCAA AAGGCACTCG GATCGTCGGG
GCGAGCAATA GCGACGTAGC GATCGGACAG GAGCGTATGC AGATGGGCGC CGCGCTCATG
ATCTTCCGTA ACGGCGCATC GATGGTGCTC GATGGGTTGA ACGGAGCCGA TCCGAACGGT
GAAGCCGGCG TGTCAGCCGA CGTCAACAAT CACTTCTTCA AGATTTTCGG CTCCACGTTC
CTGATTGCCG GCATCGCTCA ATACATCGGC CGCAATCAAA GCCAGCCAAC CGGCACGACG
CTCAATATCA ATGGCGGCGG CGGTGCCACC GGCTTGACCT CCGCTGCTGG ACAGGCGGTT
TCGCAGACCA CGCAGACGAT CCTGCAGCGC AACTCCAACA TCCAGCCGAC ATTGCGGCTC
GATCCTGGCC AGAAGCTTGT TTTCATCACC AAAGCGCCTA TCCGAATTCC ACCTAATACC
GTTGCTGGGG AGTGCTACCA ATGA
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| Protein sequence | MATPDRNAAP MTNEPAPRVR VRRGLAKTIS IFFGATILSI VFVRYFTHPR ETADQRARRE
QLEQLAKEQP ASGDALAQKL ENQFTRAQTE HPAPAAPAAP KTPPSGPVPN GMVGGASAPA
GVPAGAPGSQ EGLTPEQRLA LQRASQETDT MAVVSYGDRE QGAAASAGTN PISDYIASLQ
RQQADKRTAP GEAGTPAIQA QLAALAAANS QSQNTPGSAT NARHVAWQGQ QTNQGQSATL
TPQAAESPFM VMPGTPIPVV LNQGVNSDMP GQYSATVDRD IYDSINGSCR LIAKGTRIVG
ASNSDVAIGQ ERMQMGAALM IFRNGASMVL DGLNGADPNG EAGVSADVNN HFFKIFGSTF
LIAGIAQYIG RNQSQPTGTT LNINGGGGAT GLTSAAGQAV SQTTQTILQR NSNIQPTLRL
DPGQKLVFIT KAPIRIPPNT VAGECYQ
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