Gene Rpic12D_5399 details

Gene Information

• Locus tag: Rpic12D_5399
• ID: 8015971
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia pickettii 12D
• Kingdom: Bacteria
• Replicon accession: NC_012851
• Strand: -
• Start bp: 11453
• End bp: 13324
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644827231
• Product: ParB domain protein nuclease
• Protein accession: YP_002978431
• Protein GI: 241258165
• COG category: [K] Transcription
• COG ID: [COG1475] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR00180] ParB-like partition proteins

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.883883
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACGCA ACCTGATTAC CGTCCCCCTG TCCTGCCTTG TCGATTCCGA CGCCAACGTG 
CGCACCGGCG AACTGCCGAA CATCCCGGCG CTTGCCGCGA CTATCCGCGT GCATGGCCTC 
ATGCACCCGC TGGTCGTCAC CGAAGTCAAA AAGGGCCGCA AGACCTGCTA TCCCGTCGCC 
GCAGGGCGTC GGCGCCGCGC CGCTCTGGAA CTGCTGCGCG ATCAAGGCGC GATCGATGCC 
GATCATGAAG TGCTGTGCCT GCTGGCGGAG AGCGAAGCGG AGGCACTGGA ACTGTCCACG 
GCGGAGAACA TCGAGCGCGA AGACATGCAC CCCGCCGACG AATATGAAGC CTTCCGCAGG 
ATGGTGGACG CCGGCACCAG CATCGAGGAC GTGGCAGCGC GCTACGGCGT CACGCCCGCT 
GTCGTGGAGC GGCGCCTGAA GCTGGCCAAG GTGTCGCCCG CGCTGATCGC CGCCTATCGC 
GCTGACGATA TGTCGCTTGA ACAACTGATG GCTATGACCG TCACGGACGA TCACGCGGCG 
CAAGAACAGG TGTGGAAGTT TCAGCCTCAC CATGAGCGCA CGCCGGAAAA GCTGCGCCGC 
GCGCTGCTCG GACAGGACAC CGTGCGCTCG GACAGCCCCC TCGCCGCCTA TGTCGGCAAG 
GATGCCTATC TCGCTGCGGG TGGGCGCATG CAGGTGGACT TGTTCCAGTC CGCTGCCTAC 
TGGCTTGACG GTGCGCTCGT GCGGGATATG GCGCTGGGCA AGATGGGCGC AGAGGCCGAG 
GCGATCCGCA CCGCCGAGGG CTGGGCATGG GCGCTGGCGC TGCTGAATCC GAGCTACAGC 
GATATGGACG CTTTCGGCCA CGCTCCGACA ACCCTGCGCG AACCGACCAA GAAGGAAGCC 
GCCGCGATCA AGAAGCTGGA TACCCGCAAA GCCAAGATCG AGCGCGACAT GGGCAGCATG 
GAGGAACGAG GCGAGGAAGA ATCCGAGGCG TATGCGGCGC TGTCTGACGA GTGGGACAAG 
ATCGAAAGCG AATTGAGCGA CCTGAGCGAC CAGATGCAGG TCGTGGCCGA CAAGAGTCTT 
GCGGGCGTTG TCGTTCTCTT CCAGCACAAC ACCGTCAAGA TTCTGCGCGG CGCGATCAAG 
CCGGAAGACC GCAAGGCCGC TGCCAAGATC GAGCGCGCCG CCACGCGCGC CGCATCCGGT 
GACGGTGACG GCACCGACGC TGCACCCGCA CCCACCCTTT CAGAAAAGCT CACCCGCGCC 
CTGACCGCAC AACGCACCAC GGCCCTGCAG GCGGTGCTGA TCGAGCGCAC CGATGTTGCG 
CTCGCCACGC TCGCTTATGG GCTGGTTTCG TCGCTGTGGT CGGAACGCTA TTGGCGTGCC 
AACGCGGTCG GCGTGCGCAC CACCGACATG CGCTACACCG TCACACAGGC TGATGCCAGC 
ATCGAAACCT CGCGCGCGTG GCAGCAGATC GAGGCCGCAA GCGAAGCTTG GAAGACCCGC 
CTGCCGGAAG AACTCGATGC GCTGTGGCCG GTGCTTCTGG CGATGCCGCG CGACGAACTG 
CTGTCGCTGC TGGCCTTCTG CACTGCCGTG ACAGTGAACG GCATCCAGCC GCGCGCGGGC 
GAGCACGAAA CCGATGTGAT CGCGCAATCC GTCGCGCTCG ACATGGCCGA CTGGTGGGAA 
GCCACCACCG AGAGCTACTT GTCGCACGTG CCCAAGGCAC AAGTGCTGGC CGCAGTCACG 
GAAGGCGTCG GTGCCGCCGA GGCGGCACCG CTCGCCGCGA TGAAGAAGGG GCAAATGGTG 
GAGGCCGCCG CGCGCGCGCT CGCGGGCAAG CGCTGGCTGC CCTCCGTCCT GCAAGCCAGC 
GCTACGCCTT AG 

 

Protein sequence

MQRNLITVPL SCLVDSDANV RTGELPNIPA LAATIRVHGL MHPLVVTEVK KGRKTCYPVA 
AGRRRRAALE LLRDQGAIDA DHEVLCLLAE SEAEALELST AENIEREDMH PADEYEAFRR 
MVDAGTSIED VAARYGVTPA VVERRLKLAK VSPALIAAYR ADDMSLEQLM AMTVTDDHAA 
QEQVWKFQPH HERTPEKLRR ALLGQDTVRS DSPLAAYVGK DAYLAAGGRM QVDLFQSAAY 
WLDGALVRDM ALGKMGAEAE AIRTAEGWAW ALALLNPSYS DMDAFGHAPT TLREPTKKEA 
AAIKKLDTRK AKIERDMGSM EERGEEESEA YAALSDEWDK IESELSDLSD QMQVVADKSL 
AGVVVLFQHN TVKILRGAIK PEDRKAAAKI ERAATRAASG DGDGTDAAPA PTLSEKLTRA 
LTAQRTTALQ AVLIERTDVA LATLAYGLVS SLWSERYWRA NAVGVRTTDM RYTVTQADAS 
IETSRAWQQI EAASEAWKTR LPEELDALWP VLLAMPRDEL LSLLAFCTAV TVNGIQPRAG 
EHETDVIAQS VALDMADWWE ATTESYLSHV PKAQVLAAVT EGVGAAEAAP LAAMKKGQMV 
EAAARALAGK RWLPSVLQAS ATP