Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_5356 |
Symbol | |
ID | 8007853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012849 |
Strand | - |
Start bp | 247415 |
End bp | 248947 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644822564 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_002973824 |
Protein GI | 241114349 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAAC TGGTCATTGC AACGGCTGTG GGGCTCGTTC TTATCGGGAC CGCCATCTAT GGCGCCTACC GGGTCGGCGT CACGCAGGGT GCCCGGTTGG CACCATCGTC GATGCCGGCC AGCTCGGCAT CCGGCCTCAA GGCCGGCGAC GTCGATCCCC AGACCGGCAA GAAGGTACTG TACTGGCACG ACCCCATGGT GCCCGGGCAG CGTTTCGACA AGCCGGGCAA ATCCCCCTTC ATGGACATGC AGTTGGTGCC CGTCTATGCC GAGGGGGACG GAGGTAGCGG CATCGCGGTC GATAGCCGTG TTGCGCAAAA CCTCGGCATC CGCACGACCG AAGTCAAAGC CGGCCGGTTG AGCGCGGTGC TGGAGGCGCC CGGCAATATC GCCATCGACG AGCGCAGCGT GCAGGTGATC CAGGCGCGCA CGAATGCCTT CGTCCAGCAC GTCGCGGTCA GGGCGACGCT TGACCCCGTG CGGCGGGGGC AGGCACTGGT GACGCTGTAT TCGCCGGACT GGGTGGCGGC CCAGGAAGAG TATCTGGCCG TGTTGCGCCA GTCGGCACAC GGTCAGGCCG ATCTCGCCGG TGCGGCCAAG GCGCGCATGC TGCAGGCCGG CATGACGCCG GGTCAGGTCA GCGCGGTCGA GGCATCCGGC CGGCTGCAGC CCAGCGTGGG CATCGCAAGC CCCATCGATG GCATCGTGAC TGAGGTTGCG GTGCGAGACG GGATGACCGT CTCCCCCGGC ATGACGCTAT TCCGCTTGGC CGACCTGAGC CAGGTCTGGG TCATTGCCGA GGTACCGGAA GGCCAAGCTC GCATCATCTC GCCTGGCCTC GCGGTCAAGG TGACACCGAC CGGGGCAGTC GAGCCGCTGG TCGGCAAGGT CGACACCGTG TTGCCCGACG TCAACCCGGC GACGCGGACC ATCAAGGTGC GCATCGTCCT GCCCAACAAG GGCCGGCACC TGTTGCCGGG CATGTTTGCC ACGGTCCGCT TCGACAGCGG CGAGCACCAG GACGTGCTGA CCATCCCGTT GGAGGCCGTC ATCCGTACCG GTCAGCGCAG CATTGTCATG GTGGACGGAG GTCAGTCGGG CTTTGTGGCC ACCGAGATCA AGACCGGGCG CGAGGCCGGC GGCATGGTCG AAGTCCTGGC GGGCCTCAAG GCTGGCCAGA AGGTAGTCAC CTCCGGCCAG TTCCTGATCG ATTCGGAGGC CAGTCTGCGC GGCACCACCG AGCGCATGGC GGCGCCGGCC GCGGCATCTG AGCCCGCGGC GGCCACCACC GAACACGAAG GCGTCGGTCG CATCGAGGCC GTCACGGGTG AAGGCCTGAC AATCTCGCAT GGTCCGATCC CCTCGATTCA GTGGGGTGCC ATGACGATGG ATTTCGCGGC GCCGTCCGCC GGGCTACCGA AGGGACTGAA GGCGGGTGAC CGGGTGCGAT TCCGCTTCCA CCTGGATAAG GACGGCATGG CAGTCCTCTC CTCGGTCGCG CCCGCCGGCG CGGATCAGGG AGGCAAGCCA TGA
|
Protein sequence | MKKLVIATAV GLVLIGTAIY GAYRVGVTQG ARLAPSSMPA SSASGLKAGD VDPQTGKKVL YWHDPMVPGQ RFDKPGKSPF MDMQLVPVYA EGDGGSGIAV DSRVAQNLGI RTTEVKAGRL SAVLEAPGNI AIDERSVQVI QARTNAFVQH VAVRATLDPV RRGQALVTLY SPDWVAAQEE YLAVLRQSAH GQADLAGAAK ARMLQAGMTP GQVSAVEASG RLQPSVGIAS PIDGIVTEVA VRDGMTVSPG MTLFRLADLS QVWVIAEVPE GQARIISPGL AVKVTPTGAV EPLVGKVDTV LPDVNPATRT IKVRIVLPNK GRHLLPGMFA TVRFDSGEHQ DVLTIPLEAV IRTGQRSIVM VDGGQSGFVA TEIKTGREAG GMVEVLAGLK AGQKVVTSGQ FLIDSEASLR GTTERMAAPA AASEPAAATT EHEGVGRIEA VTGEGLTISH GPIPSIQWGA MTMDFAAPSA GLPKGLKAGD RVRFRFHLDK DGMAVLSSVA PAGADQGGKP
|
| |