| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5287 |
|---|
| Symbol | |
|---|
| ID | 8007784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012849 |
|---|
| Strand | - |
|---|
| Start bp | 174896 |
|---|
| End bp | 178063 |
|---|
| Gene Length | 3168 bp |
|---|
| Protein Length | 1055 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644822497 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_002973757 |
|---|
| Protein GI | 241114282 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCAC GGCTGATTCT CGCGTCCATC CGCAACCGCT TCCTGGTGCT GCTAGCGACC
GTCATGCTGA CGGCCTGGGG TCTGTGGGCC GCGCGCAGCA CGCCGCTCGA TGCGCTGCCC
GACCTGTCGG ACGTACAGGT CATCATCCGC ACGCCGTTCC CTGGCCAAGC GCCGCAGATC
GTGGAAAACC AGGTCACGTA TCCGCTGACC ACCACCATGC TGTCGGTGCC GGGCGCCAAG
ACGGTGCGCG GCTACTCGTT CTTCGGCGAT TCGTTCGTCT ATGTGCTGTT CGAGGACGGG
ACTGACCTGT ATTGGGCACG CTCGCGCGTG CTGGAGTACT TGAACCAGGT GCAGTCCCGC
CTGCCTGCGG CGGCCAAACC GGCGCTGGGC CCGGATGCCA CCGGCGTGGG CTGGATCTAC
GAATACGCGC TGGTCGATAA GACCGGCCGG CACGACTTGG CCCAACTGCG GGCGTTGCAG
GACTGGTTCC TGCGCTTCGA GTTGAAGGCC CTGCCGAACG TCGCGGAGGT CGCTTCCGTC
GGCGGCATGG TCAAGCAGTT CCAGGTGGTG TTGCAGCCGG ACCGGCTGCG TGCGTTCAAC
CTGACACAGG CCAAGGTGCT GGCAGCGCTC AAGGGTGCCA ACCAGGAGAC CGGTGGCTCC
GTGCTGGAAC TGGGCGAAGC CGAGTACATG GTCCGCGCCA GCGGCTACCT GAAGACGCTC
GACGACTTCC GGCAGATTCC CCTGATGACG AACGATGCGG GCATCGCCGT GCATTTGGGC
GATGTCGCCA CCGTCCAACT CGGGCCCGAG ATGCGCCGTG GCATCGCGGA ACTGAACGGT
CAGGGCGAGG TGGCAGGTGG CGTCGTCATC CTGCGTTCAG GCAAGAATGC CCTGGAGACG
ATCGAAGCCG TCAAGGCCAA GCTCGCCACG CTGCGCACCA GTCTGCCCGA AGGCGTGGAG
ATCGTTCCTG TCTACGACCG GTCCGGTTTG ATCAAGCGCG CGGTGGACAA CCTGACGCAC
AAGCTGATCG AGGAATTCAT CGTCGTCGCT GTCGTGTGCC TGGTGTTCCT GTTCCATCTG
CGCTCGGCAC TGGTGGCAAT CGTCTCGCTG CCGCTGGGCG TCCTGGCGGC CTTCCTGGTG
ATGCGATACC AGGGCGTCAA CGCCAACATC ATGTCGCTGG GTGGCATCGC CATCGCCGTC
GGCGCCATGG TCGACGCGGC CGTGGTGATG ATCGAGAACG CGCACAAACA TCTGGAGCAT
TGGCTCGAGG ACAACCCCGG CCGCGAACTC ACAGGCCACG AGCGCTGGAA CGTGATCGGG
GAATCGGCGG CAGAAGTGGG GCCGGCGCTG TTCTTCTCGC TGCTGATCAT CACGCTGTCG
TTCATCCCCG TGTTCACGCT GGAGGCGCAG GAGGGCCGCC TGTTCTCGCC GCTGGCGTTC
ACCAAGACGT ATTCGATGGC GGCAGCGGCT GGGTTGTCGG TCACGCTGGT GCCTGTGCTG
ATGGGCTACC TGATCCGCGG GCGTATCCCG AGCGAGCAAT CGAACCCGCT CAGCCGCTGG
CTGATCCGCC TCTACCAGCC AATGCTGTCC AAGGTGCTGG CGTATCCCAA GGCGACGGTC
GCTATCGCCA TTGTGCTGCT GGGGGCAACG GCCTGGCCGA TCCTGCGCAC AGGCGGCGAA
TTCATGCCGC CGCTGGATGA GGGCGATCTG CTGTATATGC CGTCAGCATT GCCTGGGTTG
TCGGCCGGCA AGGCGGCTCA GCTCCTGCAG CAGACCGACC GCCTCATCAA GACGGTTCCC
GAAGTGGCCA GCGTGTACGG CAAGGCTGGG CGCGCGGACA GCGCAACGGA CCCGGCGCCG
ATCGAGATGT TCGAGACCAC CATCCAGTTC AAGCCGCACG ACCAGTGGCG CCCCGGTATG
ACGACCGACA AACTGGTGGA AGAACTCGAC CGCGTGGTCA AGGTGCCGGG GCTGTCCAAC
ATCTGGGTGC CACCGATCCG CAACCGCATC GACATGCTCG CCACCGGCAT CAAGAGCCCG
GTCGGCATCA AGGTGGCGGG CACGGACTTG AAGGAGATCG ATCGACTGAC CACTCGGATC
GAGGAGACCG TCAAAACCGT GCCGGGTGTC ACCTCTGCGC TAGCGGAGCG GTTGTCCGGC
GGACGATACA TCGACGTGGA CATCAACCGA CAGGCCGCCG GCCGATACGG CCTGAACATC
GACGACGTGC AAAGCATCGT GTCATCCGCC ATCGGTGGCG ATAATGTCGG TGAGGTGGTT
GACGGCCTGG CCCGCTTCCC GATCAACCTC CGCTATCCGC GCGATTATCG GGATTCCGTG
GAGCAGTTGC GGCGTTTGCC GATTGTCACT GACCGGGGCC AGCAGATTGT GTTGTCCGAC
GTCGCGGACA TCCGCGTCGT GCAGGGCCCG CCGATGCTGC GCAGCGAGAA TGCCCGGCTC
TCGGGTTGGA TCTATGTCGA TATCCGGGGG CGCGACCTGC GCTCGGCGGT GAAGGACATG
CAGGCAGCAG TGACCAAGGC GGTGCCGATG CCGGCGGGCT ACGCGCTGAG CTGGTCAGGG
CAGTTCGAGT ACCTGGAGCG TGCGAGTGCC AAGCTGCAGG TGGTCGTACC ATTCACCTTG
CTGATCATCT TCGTGCTGCT GTACCTCGTG TTCGGCCGTA TCGACGAGGC GCTGCTCATC
ATGGGCACGC TGCCGCTCGC ACTGATCGGC GGGTTCTGGC TGCTGTATCT GCTCGGCTAT
AACCTGTCGG TGGCCGGAGT CGTCGGCTTC ATTGCGCTCG CCGGGGTGGC GGCCGAATTC
GGCGTGATCA TGCTGCTCTA TCTCAAACAC GCTTGGACCG AGCGGCAGGA AAACGGTCAA
ACTTCTACCC AAGCGCTACT GGAAGCGATT CAGGAAGGCG CCGTGCTGCG TGTACGCCCC
AAGGCCATGA CGGTGGCCGT CATCCTGGCT GGCCTGCTCC CGATCATGTG GTCGGACGGC
ACAGGCTCCG AAGTCATGCA GCGCATTGCC GCGCCGATGG TCGGCGGCAT GATCACCGCG
CCGTTGCTGT CCCTGTTTGT CGTTCCTGCT GTCTACCTGC TGCTGCGCAG GCGTGGCAGC
GGGCAATCCA TTCCCCAACC ACCCTCTCAT GACAAGGTCT CACGATGA
|
|---|
| Protein sequence | MIARLILASI RNRFLVLLAT VMLTAWGLWA ARSTPLDALP DLSDVQVIIR TPFPGQAPQI
VENQVTYPLT TTMLSVPGAK TVRGYSFFGD SFVYVLFEDG TDLYWARSRV LEYLNQVQSR
LPAAAKPALG PDATGVGWIY EYALVDKTGR HDLAQLRALQ DWFLRFELKA LPNVAEVASV
GGMVKQFQVV LQPDRLRAFN LTQAKVLAAL KGANQETGGS VLELGEAEYM VRASGYLKTL
DDFRQIPLMT NDAGIAVHLG DVATVQLGPE MRRGIAELNG QGEVAGGVVI LRSGKNALET
IEAVKAKLAT LRTSLPEGVE IVPVYDRSGL IKRAVDNLTH KLIEEFIVVA VVCLVFLFHL
RSALVAIVSL PLGVLAAFLV MRYQGVNANI MSLGGIAIAV GAMVDAAVVM IENAHKHLEH
WLEDNPGREL TGHERWNVIG ESAAEVGPAL FFSLLIITLS FIPVFTLEAQ EGRLFSPLAF
TKTYSMAAAA GLSVTLVPVL MGYLIRGRIP SEQSNPLSRW LIRLYQPMLS KVLAYPKATV
AIAIVLLGAT AWPILRTGGE FMPPLDEGDL LYMPSALPGL SAGKAAQLLQ QTDRLIKTVP
EVASVYGKAG RADSATDPAP IEMFETTIQF KPHDQWRPGM TTDKLVEELD RVVKVPGLSN
IWVPPIRNRI DMLATGIKSP VGIKVAGTDL KEIDRLTTRI EETVKTVPGV TSALAERLSG
GRYIDVDINR QAAGRYGLNI DDVQSIVSSA IGGDNVGEVV DGLARFPINL RYPRDYRDSV
EQLRRLPIVT DRGQQIVLSD VADIRVVQGP PMLRSENARL SGWIYVDIRG RDLRSAVKDM
QAAVTKAVPM PAGYALSWSG QFEYLERASA KLQVVVPFTL LIIFVLLYLV FGRIDEALLI
MGTLPLALIG GFWLLYLLGY NLSVAGVVGF IALAGVAAEF GVIMLLYLKH AWTERQENGQ
TSTQALLEAI QEGAVLRVRP KAMTVAVILA GLLPIMWSDG TGSEVMQRIA APMVGGMITA
PLLSLFVVPA VYLLLRRRGS GQSIPQPPSH DKVSR
|
|---|
| |