Gene Rpic12D_5282 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5282 
Symbol 
ID8007987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012849 
Strand
Start bp168913 
End bp170841 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content63% 
IMG OID644822492 
Productiron permease FTR1 
Protein accessionYP_002973752 
Protein GI241114277 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0672] High-affinity Fe2+/Pb2+ permease 
TIGRFAM ID[TIGR00145] FTR1 family protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACTGC AGCGCGTCGT CACCCTCATC CTGTTCTACC TGCTGACATC GGTTTCAAGC 
GCGTACGCCG ACACGCTGTC CACTCAAGAC AAGACCAAGC AGGTCTGGCA ATTACTCGAC
TATCTGGCGG TCGATTACGG TCGCTCCGTC AAGGACGGCC AGGTGGCCAA TGCCGATGAG
TACGCCGAAA TGCAGGAGTT TGCGCATGCG GCGCAGCGCC AGATTGCCGA GTTGCCGGCG
GGGCCACAGA CGCAAGCCTT GCTCAAGGAT GCTGGCGCGT TGCGCACGCT CATCGCCGAC
AAGGCCGCAC CCACCGTCGT CGGTGAACAG GCGCATAAGC TCGCGGACAG CTTGCTGGCC
GCCTACCCGG TGCCGATGGC GCCCAGCAAG GTGCCCGACC TGAAGCATGG AGCTACGCTG
TATCAAAGCC AGTGCGCGTC CTGCCATGGC AACACCGGAC ACGCCGATGG TCCGCTGGCC
GCCAAGCTGA GCCCGCCCCC CATAGCCCTG GCCGATCATC AGCGCGCCCA GGAGCGCAGC
GTCTTCGCCC TCCAGCAGAT CATCACGCGC GGTGTCGAGG GCACCTCGAT GCCGAGCTTC
GCGCAGCTCA CTGACGATGA TCGCTGGGCA CTGGCCTATT TTGCGTCGAC CTTGTCCTAT
TCCGATGCGG ACCGGCAAGC CGGCGCCAAA TTGTGGGCAT CCCGCCCGGA GCTGCATAGC
GCGGTGCCGA CGCTCGCCAA GCTCAGCCAG ACGCCAGAAG CGTTGCTGGC CAAGACGATC
AGCCCGGATG CCGCGCGGCA ATTGACCGCC TATTTGAGAA GCGCGCCGGA TGTGCTGAAC
GCCTCCAACG CAGACAGTCT CGCAATCGCC AAGGACAAGC TCAAAGAGAG CGTAGCCGCC
TTCGACCAGG GCGACAAAGC GACTGCCTCG CGCCTGGCGC TCTCCGCCTA CCTCGACGGC
TTCGAGCCGG TCGAACCGGC CCTGGCCGCC AAGAACCAGT CGCTGTTCCA GGACATCGAA
AAAATGATGG GCCTGTATCG CAACGCGATC ACTACCGGTC AGGCCGAGCA GGTACGGGAC
ATCGCGCAGC ATCTGCAGAC GATGCTGACT GAAGCCCAGG ATGCACTGGG TGGCACCAAC
GACCCGCTGT CGACGTTCCT GGGCGCCTTG ACGATCCTGC TGCGCGAGGG CCTGGAGGCA
CTGCTTGTCG TGGTCGCCAT GATGGCCTTC CTGAAGAAGG CCGAACGCAC CGACGTGCTG
CCATACGTCC ATGCCGGCTG GATTGTTGCG CTGGCCGCCG GTGGACTGAC GTGGGCCGTC
GCTACCTACC TGGTGGATTT GAGCGGTGCC AGCCGCGAGA TGACCGAAGG CTTCTCGGCA
ATCTTTGCGG CCGTGGTCCT GCTCGGCGTG GGCATGTGGA TGCACCAGAA GAGCCTGGCC
GGTCGCTGGC AGGCCTATGT GAAGCAGAAG CTGTCCTCCG CGCTGAACAA GCGCTCGGCG
ATCATGCTGT TCGTGCTGTC ATTCGTGACG GTGTACCGCG AGGTGTTCGA GACCGTGCTG
TTCTACGCCG CGCTGTGGAG CGAAGGGAAC GGCATCTACC TGCTGGCCGG CTTGGGCTCC
GGGATTGCGA TCCTGGCGAT CATCGCCGTC GTGCTGCTGC GCTCCTCGGC GCGCCTGCCG
ATCCGCCAGT TCTTTGCCTT CAGCTCGGCT CTGGTCGCGG TCCTGGCAGT GGTGCTGATC
GGCAAGGGCG TTGCGGCGTT GCAGAAGGTT GGTTTTCTGC ACATCACGCC GATTTCGATG
CCGCGTATTG ACGTGCTGGG GATTTACCCG TCCATGCAGA CGGTGATCGC ACAGGTGGCG
ATCTTGCTGA TCATTGTGCT CAGCTTCGCG TATAACCTCC GATCGCAGAA GGCATCGAGC
AAAGCGTAG
 
Protein sequence
MQLQRVVTLI LFYLLTSVSS AYADTLSTQD KTKQVWQLLD YLAVDYGRSV KDGQVANADE 
YAEMQEFAHA AQRQIAELPA GPQTQALLKD AGALRTLIAD KAAPTVVGEQ AHKLADSLLA
AYPVPMAPSK VPDLKHGATL YQSQCASCHG NTGHADGPLA AKLSPPPIAL ADHQRAQERS
VFALQQIITR GVEGTSMPSF AQLTDDDRWA LAYFASTLSY SDADRQAGAK LWASRPELHS
AVPTLAKLSQ TPEALLAKTI SPDAARQLTA YLRSAPDVLN ASNADSLAIA KDKLKESVAA
FDQGDKATAS RLALSAYLDG FEPVEPALAA KNQSLFQDIE KMMGLYRNAI TTGQAEQVRD
IAQHLQTMLT EAQDALGGTN DPLSTFLGAL TILLREGLEA LLVVVAMMAF LKKAERTDVL
PYVHAGWIVA LAAGGLTWAV ATYLVDLSGA SREMTEGFSA IFAAVVLLGV GMWMHQKSLA
GRWQAYVKQK LSSALNKRSA IMLFVLSFVT VYREVFETVL FYAALWSEGN GIYLLAGLGS
GIAILAIIAV VLLRSSARLP IRQFFAFSSA LVAVLAVVLI GKGVAALQKV GFLHITPISM
PRIDVLGIYP SMQTVIAQVA ILLIIVLSFA YNLRSQKASS KA