| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5184 |
|---|
| Symbol | |
|---|
| ID | 8007764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012849 |
|---|
| Strand | - |
|---|
| Start bp | 82869 |
|---|
| End bp | 84131 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644822396 |
|---|
| Product | type IV secretory pathway, putative conjugative relaxase |
|---|
| Protein accession | YP_002973656 |
|---|
| Protein GI | 241114181 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACA CGCCAATGCC CATCGCTGCA TTGACCGCCA CGCTCGGTTC GCGGCTGGAC
CTCGTTCGGC AGTACGCGAA CGAGTCGTCG AGCGCGGATT TCGAGCGCAA GTGGTTGTCC
GTGCTCGAAA CCTGCGCCGA CTGGTATTCG TCGATGCCGC TGCGCCCCGA ACAGCATCCG
GAACCCGGTG GCGCGTTTCG CGCCACGGTC GAGACCGTCT ACTACGCCCT GCGGCTATCC
GGGGGACAGA AGTTCGGCGC CGACCAGCCC TCGGAGCGTC GGCGCAAGCT CGAACCACAA
TACCTGTATG CCGTGTTCCT CGCGGCGTGC TGCACCTGGC TGGACGAACC GTTCCGCCAT
TTCCAGTTCT ACCGACTGAG AGACCAGGCC GAGTGGAGCC CTGCCGCGCA TGGCGCCTTC
TCGGCTTGGC TGGAAGGTGG CGAATACCGT GTGCAACGCC GAGAGGCGCC ATTGCCCATC
GAGCGGATGC GTACCGCCCT GCTCGCACGT TCCATCCTCG GCAACACTCG GCTGGAGCTG
CTCGAGAGCA TGGTGCAAAC CGACCTCTTC GGTGCGATCA ATCCGGAGAG CCGCCCGGCC
GGTACCGAGT CGCTGCTGCA CAAGGTCCTG CGTCAAGCCG TGGCGGTGAC CTGCGACACC
GAGGACAAAG CACGGCGCGC GCGCTTTGCC CCCGATACCA CGCCGATTCC TCCCGCGAAG
ACGTTGGAGG ACGGATTTGC CGCTCACGCT CAACCGGCCC CGGCGGCCGA GAAACGTCCA
TCGCAGCCCA AAGCCAAGGC GGCAAAGAGC GAGCCGTCGG CAGCGGATAG CGTCTCGGCG
CTGTTCGAGC AGGCCAAGGC CACGCCGACG TCAACCGCTT CAGCTTCGCC TGAGACGCCA
GCGCCGACAT CGGAGAAGCC CAACACCCAA AGCTCACTGT TCGACTTGGA CTCGATGCAG
GTGCCCAAAG AGCCAACGGT CAAACAGGAA GACCCGTTTG CCGAAATCCT GAGTTCTGCG
AGCACGCTCA TGCGCGAGTT CTTCCGCGCA CTCGTGCAGG ACGTCGAGTC GGGCAAGGTG
GCCGTGCACT GGGCCGAAAA GGGGCTGGTG CTGCAAAAGC GGATTCTCGG CAGCTACGGC
ATCGCCAGCG AAACGCTGGT GGACAACCTG CGCAAGCTCA ACCTCCTCGC CAGCTCGCAG
GGCGCTGACA TCGTGCTGGT CGAGCGCATT GGCTCGCTGA TCCTCGCCCG TCCGCAGCAA
TGA
|
|---|
| Protein sequence | MNHTPMPIAA LTATLGSRLD LVRQYANESS SADFERKWLS VLETCADWYS SMPLRPEQHP
EPGGAFRATV ETVYYALRLS GGQKFGADQP SERRRKLEPQ YLYAVFLAAC CTWLDEPFRH
FQFYRLRDQA EWSPAAHGAF SAWLEGGEYR VQRREAPLPI ERMRTALLAR SILGNTRLEL
LESMVQTDLF GAINPESRPA GTESLLHKVL RQAVAVTCDT EDKARRARFA PDTTPIPPAK
TLEDGFAAHA QPAPAAEKRP SQPKAKAAKS EPSAADSVSA LFEQAKATPT STASASPETP
APTSEKPNTQ SSLFDLDSMQ VPKEPTVKQE DPFAEILSSA STLMREFFRA LVQDVESGKV
AVHWAEKGLV LQKRILGSYG IASETLVDNL RKLNLLASSQ GADIVLVERI GSLILARPQQ
|
|---|
| |