Gene Rpic12D_5012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5012 
Symbol 
ID8017439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012855 
Strand
Start bp296869 
End bp300036 
Gene Length3168 bp 
Protein Length1055 aa 
Translation table11 
GC content59% 
IMG OID644828700 
Producthelicase domain protein 
Protein accessionYP_002979900 
Protein GI241589875 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTGGG CCAATGGCTT GCTGGGGATC CGATCAAAAG GATCTACAAC GGCTAAGGCT 
GGTTCGCTTG CCGGGCTTCA TGAAGCCCGG CAGGTCCACC AAAGCCAGTT CTTCACCACG
GTGGCGCTGT CGCAGTTCTG TTGGCGCCTT GTGGAACCGA TGATGAATCG GATCGCGGAG
GAAGAAGGCA TCGCTGAGGG AAAGGCGCGG AAGTTGAGCG TGCTGGATAA CAGCGTGGGC
AGCGGTCGGT TGCTGCACTG GGCTAACCCT GAAATCCACT CCCTGTATGG GGTGGACGTC
GACGAGGGGT GCATTGCCGC GCTTGGTGAA GCGGCAAGGG AGGCAGGGTT CACGTATGAG
TTCATCCATA CGGGAATGGA GTCGATTCGG CCGAAGGATT TTGACTTCTG TCTGATCAAC
CCGCCCTTCT CCATCAACCT CCAGAGCCCA TTCCTGGCGC CCTACCCGTG CACATCGTAC
GGGGCCTTTG GTCCCAGCAC GAGCGCGCGG AGCGACGAAT ATGCGCTTTA CCAAGCGCTG
AACGCAGCGA AGTGGGTGGT GGCGATACTG CCGTCGACTC TCGCCGACGA GGTTTATCTG
AAGTCGGTAG ATGCGCATTT CCAGCATCCG TTCCGAAGGC TGCGGGCGAT GTACGACATG
CCAGTGGATG TTTTCCGGGA GGAAAACGCC ACGGTGCGCG TAACGGTGGC ACTGTTCGAC
CTTGCATTTC AAGCCGAGGC AGCACCGCGG CAACGCGTGA CCGACCTTTG CGCTGAAGTG
GAAGTCCCGA CCTTGACGGG AGGCATGCGC CGCGAGCCGC GTCTGAAGCA TTTGGAATCG
GACAAGTCGG GGCCCGCCAT CACCACACCG GTATCAGGCG ATCCCGCTGT TCGGGTGTGC
CATGACGGAC GGTGGATCAA GCTCAAGTTC CAGTGTGGTT TGACAGAGGC AATGGTGCTC
AACGCAATCT ACCGCGACCG CATCGCTGCC CATCGCCCAC ATGACGAACA CCGGTACCCG
CGCGACGTGA AGTACGTTGG GCAAGGTGCC CTTGACCTGC AGATCCATCT GGCGCAGCCA
GACCCGATGA GGAGCTTTTG GGACTTCATC GCGGTCATCG GCCGTGCCGG CGGAACTCCG
GTTGTCGAAG CTGGGCTACT CCGCTACCTG CGGAGCCAGA CAAAGGCTAC GGCAAGGCAG
AAGACGCCAT TCCGGCACAC CGTTTTGATG CCCGGCACGG GGTCCGGAAC AGAGGGGTCG
ATGCAGGGGA CCGCCAAGAA GGATCATCTG GTAGATCCGA CGAAATGGGG GTCTGCTGTG
ATCAAAGCAG GCACCACAGT CAGCTTCGTG GAGATCGAAC ACGGCCGGCA TCGTTTCGAG
CACCTAGGGA AGCAATACGT CCTGCCGTAC GAGGACATCC TGGCGCGCTT CGATCTGATC
CAAAAGGAGG CGGAGTCTGA ATGGAAAGTG GTCTACCCAG GCCTCGCCGT TCAGAATCCG
AAGCTTGCAG AAATCTGGCG GGCTCGGATT CGCTCCCTTG GGATCGATGC TTGGCTGAAT
CGCGGATACC AAATCGACGA TCTCGTGGAA TTGGCGATCA AGCGCGGTGG TGTTGTGGCC
TGGGCTATGG CTCTAGGCAA AGCGCGAGCG GCGCTGGCAA TTGCCCTGCT TCTTGGGGGC
AAGCATTCGC TGGTGGTACT CAAAGCGGCC CTTGTCGACG AGATGCTGAT CGAGATCCGC
AAGATTAGTC TTGATGGCGA ACTCTGGCAG GTGATCGAGA CACCCACGCA ACTGCAGTCG
CTGCGTCGGA TCAACATCAT TTCGGTGGAT CGCCTTAAAG CTCCAGTCGC ACCAGAGCAT
CCACGCATGA CATACGCCAA GAAGTTGCGC CGGCGCGTCG GCACGATCAT TCCCGATGAG
GCTCACTTCC TTGGGAACAT CGATACCGAT CAGACCAGCG CTGTTTGGCA GGTGTCGGCC
AAACGCCGAT TCCCGCTCAC CGGTACGCCG GCGGGCAACT ATCCGCGTGA CTGCCACGGT
CTATTGGCAT TCGCCGGGGG AGATGGCACG GCGTCACAGC CGTACGGGTA CCGCCGCTAC
TACCTTGACC CCAGTCTGCG CCACTCCATG GCACTGGCTG AACGAGGCAT CGATCGGGTG
CTGAACACGT TCTGTGAATT TGTGTGGGTC ACTCGTGAGT TCGAAGATGA ACTCAAGGGA
GCCAAGCGAG AAGTGCCACG AATCGCCAAC CTTGCTGAAT ACCGCAGGAT GCTGGCACCG
TGGATCAAAC GTCGCGTGGT GAAGGAACCG GACGTCGCTT CGTGCGTGTC CATTCCGGAT
CCGACACATG AGACGCACCT GATCGAATTC GATACGGACC ATCTGCTGCA CTACCTGGTC
GTGTCGGAGG ACTTCTCGAA GTGGTACCTG GAGGGGCTCG ATGAAGGGAA GCGAAACAAC
CTCGTTACCA TACTGGCTCG CATCAAGGCT GTGGAGATTG CCAACAATTT TCCGCAGCAT
CCGAAGGCGA CCAAGGGTTA TGCACCACTG ACGAGTAAGC AACGCTTCTG CATCGACAAG
CTCGAGGAGC TCGTGGATCT GCGCAGGCGA CCGATCATGT TCACCGGCTA CCCGGGGAAT
GCTGAGCTGG TTGCCCGTCA TCTGGCCAAG CGCCACATCG ATTCAGTGGT GATCCACGGC
GGGAAGACGA TCAAACGTCG AAACGCTGAG TTCGAGGCGC GATTCCGGAA AGGAACGGTT
CCAGTTGCGC TTGTGACGTA CGGCAGCATT GGGGAAGGTA CCAACATCCC GCAATGCAGC
GACGTGCTTC TGGCTGACAA GAGCTGGTCC GCACGCAAGG AAAGTCAGGC GATTGCCCGG
GCGCTGCGCG ATGAGAACGA GTGGGACGAA GTGAAGGTAC ATCACGCCCT CACCGAACAC
TCAATCGATT CGTATATGCA GCAAGTAGTG TCCTATAAGG CCGACAGCTT CAACGCCGGC
TTCGACTGGG GCACACCGAC CACGTTCAAT CAGGAATTCC TGCACATGGA CGTGATCTTC
CGGCGATTCT GCAGTGACCT ATCCAAGCTG GCAGGCGTTC ACGCCCATGA CCTGCGCAAG
TATCTCGAAA AGGAGGTGTC GCATGCTAAG CAGCGCATCG CAGCTTAA
 
Protein sequence
MSWANGLLGI RSKGSTTAKA GSLAGLHEAR QVHQSQFFTT VALSQFCWRL VEPMMNRIAE 
EEGIAEGKAR KLSVLDNSVG SGRLLHWANP EIHSLYGVDV DEGCIAALGE AAREAGFTYE
FIHTGMESIR PKDFDFCLIN PPFSINLQSP FLAPYPCTSY GAFGPSTSAR SDEYALYQAL
NAAKWVVAIL PSTLADEVYL KSVDAHFQHP FRRLRAMYDM PVDVFREENA TVRVTVALFD
LAFQAEAAPR QRVTDLCAEV EVPTLTGGMR REPRLKHLES DKSGPAITTP VSGDPAVRVC
HDGRWIKLKF QCGLTEAMVL NAIYRDRIAA HRPHDEHRYP RDVKYVGQGA LDLQIHLAQP
DPMRSFWDFI AVIGRAGGTP VVEAGLLRYL RSQTKATARQ KTPFRHTVLM PGTGSGTEGS
MQGTAKKDHL VDPTKWGSAV IKAGTTVSFV EIEHGRHRFE HLGKQYVLPY EDILARFDLI
QKEAESEWKV VYPGLAVQNP KLAEIWRARI RSLGIDAWLN RGYQIDDLVE LAIKRGGVVA
WAMALGKARA ALAIALLLGG KHSLVVLKAA LVDEMLIEIR KISLDGELWQ VIETPTQLQS
LRRINIISVD RLKAPVAPEH PRMTYAKKLR RRVGTIIPDE AHFLGNIDTD QTSAVWQVSA
KRRFPLTGTP AGNYPRDCHG LLAFAGGDGT ASQPYGYRRY YLDPSLRHSM ALAERGIDRV
LNTFCEFVWV TREFEDELKG AKREVPRIAN LAEYRRMLAP WIKRRVVKEP DVASCVSIPD
PTHETHLIEF DTDHLLHYLV VSEDFSKWYL EGLDEGKRNN LVTILARIKA VEIANNFPQH
PKATKGYAPL TSKQRFCIDK LEELVDLRRR PIMFTGYPGN AELVARHLAK RHIDSVVIHG
GKTIKRRNAE FEARFRKGTV PVALVTYGSI GEGTNIPQCS DVLLADKSWS ARKESQAIAR
ALRDENEWDE VKVHHALTEH SIDSYMQQVV SYKADSFNAG FDWGTPTTFN QEFLHMDVIF
RRFCSDLSKL AGVHAHDLRK YLEKEVSHAK QRIAA