Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4600 |
Symbol | |
ID | 8022288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 1247299 |
End bp | 1249311 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644833372 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_002984512 |
Protein GI | 241666153 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0221313 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGT ACGTTACGAC CCCTCGGCCC CGCCTGGGGC ACTCCATGGT GCGAGCCAAT ATGGCCGGTG CCGGTGCGGC ACTGACCATT GCCGGCTTCC TGCTCATCGT GTTCCAGTTC ATCGCGCTGC ATGCGGCGCT GGTGCGCGAT GTGCACGTGC AGGCGCGCAT CGTCGGTGCC AACAGCGTGG CCGCGCTGCT TTTCAATGAC CGCCGCGCGG CAGAAGAAAC GCTGGGCGCT CTGGAGGCAT CGCCGTCACT GCGCGCTGCT GGCATTTTCA GCGCGCTGCG CAAGCCGCTG GCGCTGTATC AGCACGGCGA TGCCGCGCCC GTCCGGGCAC CCGATGCCGC CATGCTGCGC GAGTCGGCTG TATCGACGCT CACCACGCTG GAGGTGGTGG AGCCCGTGGA ATCGGAGCGC CGCGTGATCG GCTACGTGGT GGTGCGCTCC AGCCTGAGCG AGCTGTACAT GCAACTGCTC GGCTATGCGG TGCTGACCGT ATCGGTGGGC ATCGGTGCAA TGGGCCTCGC GTATCTGGTG ATCGCCCGCA TGCGCCGCGC GGTGCTGCAG GCAGAGGCGC ACCTGGACTA CCTGGCCCAC ATCGATTCGG TGACGGAACT GCCGAACCGG CACGCCTTCA ACGAACGCCT GCAGGTGTCG CTCAAGCGCG CAGGCCAGAC GGGGGCGGTT GGGCTGCTCC TGCTGGATCT GGACAACTTC AAGGTCGTCA ATGACACGCT GGGCCACAAC AATGGCGACC GCCTGCTGCG CCAGGTTGCA CGGCGGCTTA ACGACGTGAT CGAGCAGGCC AACCTGCGCG CCGTGCTGTG CCGCATCGGC GGAGACGAGT TCGCGGTGAT CGCAGAGTTG TCGGGCCGTG CACAGATTGC CGAGACAGAA GCAGCAACGC TGGCCGATGG GTTGGCCAAG CGCATTCTTG CCGCGCTGGG GGCGCCGTTT TCACTCGACC TGCATCAGAT CTACGTCACG GCCAGCGTGG GCGTGAGCCT GTATCCGCAT GACGCACGTG ACGTGCAGGT GCTCACGCGC AACGCCGACA CGGCGATGTA TCACGCCAAG AACCACGGCA AGAATGCGGC CGCCAGCTTT ACGTCGGAGA TGGACCAGCA GGCGCGCCGC CGCCTGCGCG TGGAAGCCGA TCTGCGCCGG GCGCTCGACC GCGAAGAGTT GTTGCTGGCC TACCAGCCGC AGGTGCGCCT GAGCACCGAC GATGCTCACG ACGCGGTGAT CTCCAGGGCG AACGTCTACG GCGTGGAAGC ACTGGTGCGC TGGCGCCATC CCGAGATCGG GCTGATTGGC CCGGGCGAGT TCATCGCCGT GGCGGAAGAA ACCGGGCTGA TCGTGCCGCT TGGCCTGTGG GTGCTGCGTA CCGCGTGCCA ACAGGCGGTG CGCTGGATGC GCGAAGACGG CGTCACGCTG CGGGTGGCCG TCAACCTGTC GGCTCGGCAG ACGCGCGACC CGGCGCTCGT GGAAAACGTC ATGGACGTGC TGCGCGAAAC CGGTATGCCG CCGCATCAGC TCGAGCTCGA AATTACGGAG AGCGTGCTGA TGGAAGACAT CGAAGCCAAC ATCGCGCTGC TCGAATCCCT GCACGCGGCC GGCATCAGCC TGTCGATCGA CGATTTCGGC ACCGGGTATT CGTCGCTGGC GTATCTGCAG CGTTTTCCGA TCCAGAAGCT CAAGATCGAC CGCAGCTTTG TGCAGCGCAT GCCCGGCGAC GGCGAAGCCA TTGCAGGCGC GGTGATCGCC ATGGCCCACA GCCTGCGCAT GCAGGTGGTG GCCGAAGGCG TGGAAGACCC CGAGCAGCTC GCGTTGCTGC GCGACGCCGG CTGCGACCTG GGGCAGGGCT ACCTGTTCTC GCGCCCGCAG CAAGCCGACG CGTTGATGGC CTGGCTCAAC CGACTGGACA ACGCTGCGGA CAGCGGCACC GCTGCGTATG CCGAAGAGGA GGTGGTGCCG AGCGCGTCGT TGCCGTCGTC GTTGGCGGGG TAG
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Protein sequence | MSLYVTTPRP RLGHSMVRAN MAGAGAALTI AGFLLIVFQF IALHAALVRD VHVQARIVGA NSVAALLFND RRAAEETLGA LEASPSLRAA GIFSALRKPL ALYQHGDAAP VRAPDAAMLR ESAVSTLTTL EVVEPVESER RVIGYVVVRS SLSELYMQLL GYAVLTVSVG IGAMGLAYLV IARMRRAVLQ AEAHLDYLAH IDSVTELPNR HAFNERLQVS LKRAGQTGAV GLLLLDLDNF KVVNDTLGHN NGDRLLRQVA RRLNDVIEQA NLRAVLCRIG GDEFAVIAEL SGRAQIAETE AATLADGLAK RILAALGAPF SLDLHQIYVT ASVGVSLYPH DARDVQVLTR NADTAMYHAK NHGKNAAASF TSEMDQQARR RLRVEADLRR ALDREELLLA YQPQVRLSTD DAHDAVISRA NVYGVEALVR WRHPEIGLIG PGEFIAVAEE TGLIVPLGLW VLRTACQQAV RWMREDGVTL RVAVNLSARQ TRDPALVENV MDVLRETGMP PHQLELEITE SVLMEDIEAN IALLESLHAA GISLSIDDFG TGYSSLAYLQ RFPIQKLKID RSFVQRMPGD GEAIAGAVIA MAHSLRMQVV AEGVEDPEQL ALLRDAGCDL GQGYLFSRPQ QADALMAWLN RLDNAADSGT AAYAEEEVVP SASLPSSLAG
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