| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4589 |
|---|
| Symbol | |
|---|
| ID | 8022277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1235243 |
|---|
| End bp | 1236184 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644833361 |
|---|
| Product | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein |
|---|
| Protein accession | YP_002984501 |
|---|
| Protein GI | 241666142 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.838268 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAAC ATCGACGACG TTTTCTGCAA TCCACGCTGG CACTCGCTGC CGCGCCTGCC
TTGTCCATCG CGCAACCCCG CCTCGTGCTC AAGGCCGGCG ACCAGAAGGG CGGACTGCGC
GCGCTGCTCG AAGCCGCCGA CGCGCTCAAA GGCGTGCCGT ACGACATCCA ATGGACCGAA
TTTCCGGCGG CCGCACCGCT GGCCGAAGCG CTCAATGCAG GCGCCGTCGA CTTGGGCCCC
ATTGGGGATG CGCCAGCCAT CTTTGCCTTG GCGGCGGGTA CGCGCATCAA GCTGATCGGC
GCCAACCGAT CCGACCCATA CGGCACGGCG GTGCTGGTGC GGCCGGATTC TCCGCTGAAG
ACCGCCGCGG ATCTGAAAGG CAAGTCGATC GGCACAAACC GCGGGTCGAT CGGGCACTTC
GTGGCGCTCA AGGCGTTGGA ATCTGCAGGG CTGGGCCCGG ACGACGCCAA CTTCCGTTTT
CTGCCGCCTG CGGATGCCAA GCTTGCGCTG GTCAACGGTT CGATCGATGC GTGGTCAACG
TGGGAGCCTT ACACCGCGAT GGCCGAAACG GCCAAGCATG CGCGCGTGCT GGTCAACGGA
CGCGGGTTGT GGTCGGGCCT CAGCTACCTG GCGGCGACCG ACGCGGCCCT GGCGGCCAAG
CGCGACGCGC TGCGCGATTT CCTGCAGCGC GTGGTACGCG CGCAGGTGTG GTCGTATCAG
CATGTCGATA GCTTTTCAGC CACGCTGGCC CGCATCATCG GCATTGCGCC GGAGGCCGCG
CGGCTGCAGT TTGCGCGGCG GCAGACTGTG TGGCGCGCCA TCGATCCGCA GCTCATTGCG
GAGCAGCAGC GCACGGCCGA TTTCTACGTG AAGGTGGGCC TGCTCAAACA GCGGCTGGAG
GTGGCTACCA CGTTTGACAC GGGCTTTCCG CTAATCGCCT AG
|
|---|
| Protein sequence | MPQHRRRFLQ STLALAAAPA LSIAQPRLVL KAGDQKGGLR ALLEAADALK GVPYDIQWTE
FPAAAPLAEA LNAGAVDLGP IGDAPAIFAL AAGTRIKLIG ANRSDPYGTA VLVRPDSPLK
TAADLKGKSI GTNRGSIGHF VALKALESAG LGPDDANFRF LPPADAKLAL VNGSIDAWST
WEPYTAMAET AKHARVLVNG RGLWSGLSYL AATDAALAAK RDALRDFLQR VVRAQVWSYQ
HVDSFSATLA RIIGIAPEAA RLQFARRQTV WRAIDPQLIA EQQRTADFYV KVGLLKQRLE
VATTFDTGFP LIA
|
|---|
| |