| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4548 |
|---|
| Symbol | |
|---|
| ID | 8022236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1186408 |
|---|
| End bp | 1187475 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644833321 |
|---|
| Product | Alcohol dehydrogenase GroES domain protein |
|---|
| Protein accession | YP_002984461 |
|---|
| Protein GI | 241666102 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00643704 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCAT CGTCTTCCTT GGTGATTCCC ATGAAAGCAC TTGTCTACGA GGGGCCTGGC
AAGATCACCC TGGCCGACAA GCCGAAACCG GAGTTGCAGG CACCCGGCGA CGCCGTGGTG
CGCGTCACGT TGACCACCAT CTGCGGCACC GATCTGCACA TCATCAAGGG CGACGTCCCG
ACCTGCGAGC CGGGGCGCAC GCTGGGCCAC GAAGGCGTGG GCGTGGTGGA ATCGGTCGGC
GCGGCCGTGA CATCGCTACA GCGGGGTGAT CACGTGCTGA TCTCGTGCAT TTCGTCTTGC
GGAAAATGTG CGAATTGCCG GCGTGGCATG TACTCGCATT GCGAGACGGG CGGCTGGATC
CTGGGACATC GCATCGACGG CGTGCAGGCC GAGTACGTCC GCATTCCGCA TGCGGAGACC
AGCCTCTACA AACTGCCGCC GGGCGTCGAT GAAGAGGCGC TGGTCATGCT GTCGGACATC
TTTCCGACCG GATTCGAATG CGGTGTGCTC AATGGCCGCG TTCAGCCGGG CAACAGCGTA
GCGATTGTCG GCGCAGGCCC CATCGGGCTG GCCTCGCTGC TGACGGCGCA GTTCTACTCG
CCGGCGCAGA TCATCATGAT CGACACGAAC GCGGCACGGC TGGAAGTGGC CACCAGGCTG
GGCGCAACGG CGTGTATCGA CGTCTCCAGT GAAGGCGCCG CAGCCGCCGT GAAGCGGCTC
ACGGATGGCG TGGGCGTCGA CTGTGCGATC GAGGCGGTGG GCGTGCCCGC GACGTTCGAG
CTCTGCCAGC AACTGGTTGC GCCAGGTGGC GTGATTGCAA ATATCGGCGT GCATGGCGTC
AAGGCGGACC TTCACCTGGA AACCTTGTGG AGCCAGAACA TCGCCATCAC CACGAGGCTG
GTGGATACCG TCAGCACGCC GATGCTTCTG AAAACGGTAC GTGCGGGGAA GCTGCTGCCT
GGGCGGCTCA TTACGCACCG GTTCAGGCTC GATGACATCC TCGCCGCCTA CGACACGTTC
CGCAACGCGG CAAAGACGCA GGCGCTCAAG GTGATCATCT CCGCATAG
|
|---|
| Protein sequence | MESSSSLVIP MKALVYEGPG KITLADKPKP ELQAPGDAVV RVTLTTICGT DLHIIKGDVP
TCEPGRTLGH EGVGVVESVG AAVTSLQRGD HVLISCISSC GKCANCRRGM YSHCETGGWI
LGHRIDGVQA EYVRIPHAET SLYKLPPGVD EEALVMLSDI FPTGFECGVL NGRVQPGNSV
AIVGAGPIGL ASLLTAQFYS PAQIIMIDTN AARLEVATRL GATACIDVSS EGAAAAVKRL
TDGVGVDCAI EAVGVPATFE LCQQLVAPGG VIANIGVHGV KADLHLETLW SQNIAITTRL
VDTVSTPMLL KTVRAGKLLP GRLITHRFRL DDILAAYDTF RNAAKTQALK VIISA
|
|---|
| |