Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4491 |
Symbol | sdhA |
ID | 8022179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 1125701 |
End bp | 1127479 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644833265 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_002984405 |
Protein GI | 241666046 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00238917 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTCGCAG TCAAGACTGG GCTGCCGCGC CGCAAATTCG ACGTCGTGAT CGTCGGTGCG GGCGGTTCGG GCATGCGCGC ATCGCTGCAG CTGGCAGAAG CCGGCCTCTC CGTGGCCGTG CTGTCCAAGG TGTTCCCCAC CCGCTCGCAC ACCGTTGCGG CGCAGGGTGG TATCGGTGCT TCGCTGGGCA ACATGAGCGA AGACAATTGG CACTATCACT TCTACGACAC CGTCAAGGGT TCCGACTGGC TCGGCGACCA GGACGCGATC GAATTCATGT GCCGCCAGGC GCCGAACGTG GTCTATGAAC TGGAACACTT CGGCATGCCG TTCGACCGCA ACGCCGACGG CACCATCTAC CAGCGTCCGT TTGGCGGCCA TACGTCGAAC TACGGCGAGA AGCCGGTGCA ACGCGCTTGC GCCGCCGCCG ACCGTACCGG TCACGCGTTG CTGCACACGC TGTATCAGCG CAACGTCAAG GCCAAGACCC ACTTCTTCGT CGAATGGATG GCGCTGGATC TGATCCGCGA TCAGGACGGC GACGTGCTGG GCGTGACCGC GCTGGAGATG GAAACCGGCG AGGTCTACAT CCTCGAAGCC AAGACGACGC TGTTCGCCAC GGGCGGTGCA GGCCGGATCT ACGCGGCTTC CACCAACGCC TTCATCAACA CGGGTGACGG CCTGGGCATG GCGGCACGCG CAGGCGTGCC GCTGGAAGAC ATGGAGTTCT GGCAGTTCCA CCCGACTGGC GTGGCCGGCG CGGGCGTGCT GATCACGGAA GGCGTGCGCG GCGAAGGCGG CATCCTGCGT AACAAGGATG GCGAGCGCTT CATGGAGCGC TATGCCCCGA CGCTGAAGGA TCTGGCGCCG CGTGACTTCG TGTCGCGCTC GATGGACCAG GAAATCAAGG AAGGCCGCGG CTGCGGTCCG AACGGCGACT ACGTGCTGCT CGACCTGACG CACGTCGGCG CCGAGACCAT CATGAAGCGC CTGCCGTCGA TTCGCGAGAT CGGCCTGAAG TTCGCCAACG TCGACGCCAT CAAGGAACCG ATTCCCGTGG TGCCGACCAT CCACTACCAG ATGGGTGGCA TTCCGACGAA CTATCACGGC CAGGTGGTGG TGCCGAAGAA CGGCAACCCG AACGAGGTCA TCAACGGCTT CTACGCGATC GGCGAATGCT CGTGCGTGTC GGTGCACGGC GCCAACCGCC TGGGCACGAA CTCGCTGCTC GACCTGGTGG TGTTCGGCCG TTCGGCGGGT AACCACATCA TTGCGCAGAA CCTGAAGAAC CGCGAGCACA AGCCGCTGCC GGCCGACGCC GCCGACCGCG CGCTGTCGCG CCTGGCCAAG CTCGATTCGT CGAGCTCGGG CGAGTACGCG CAGGACGTCG CCAACGACAT CCGCCGCAAC ATGCAGTCGC ACGCTGGCGT GTTCCGTACG CAGAAGCTCA TGGATGAAGG CGTCGAGCGC ATCCTGGAAG TGGCCGAGCG TGCTGGCAAC ATCCACCTGA AGGACAAGTC CAAGGTGTTC AACACCGCGC GCGTCGAAGC GCTGGAAGTG GCCAACCTGG TGGAAGTGGC GAAGGCGACG ATGGTGTCGG CTGCCGCCCG CAAGGAATCG CGCGGCGCAC ACGCCCACAG CGACTTCCCG AACCGCGACG ATGAAAACTG GATGAAGCAC TCGCTGTGGT ATTCCGAAGG CAACCGCCTG GACTACAAGC CCGTGCAGTT GAAGCCGCTG TCGGTGGAAT CGGTGCCGCC CAAGGCGCGT ACGTTCTAA
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Protein sequence | MVAVKTGLPR RKFDVVIVGA GGSGMRASLQ LAEAGLSVAV LSKVFPTRSH TVAAQGGIGA SLGNMSEDNW HYHFYDTVKG SDWLGDQDAI EFMCRQAPNV VYELEHFGMP FDRNADGTIY QRPFGGHTSN YGEKPVQRAC AAADRTGHAL LHTLYQRNVK AKTHFFVEWM ALDLIRDQDG DVLGVTALEM ETGEVYILEA KTTLFATGGA GRIYAASTNA FINTGDGLGM AARAGVPLED MEFWQFHPTG VAGAGVLITE GVRGEGGILR NKDGERFMER YAPTLKDLAP RDFVSRSMDQ EIKEGRGCGP NGDYVLLDLT HVGAETIMKR LPSIREIGLK FANVDAIKEP IPVVPTIHYQ MGGIPTNYHG QVVVPKNGNP NEVINGFYAI GECSCVSVHG ANRLGTNSLL DLVVFGRSAG NHIIAQNLKN REHKPLPADA ADRALSRLAK LDSSSSGEYA QDVANDIRRN MQSHAGVFRT QKLMDEGVER ILEVAERAGN IHLKDKSKVF NTARVEALEV ANLVEVAKAT MVSAAARKES RGAHAHSDFP NRDDENWMKH SLWYSEGNRL DYKPVQLKPL SVESVPPKAR TF
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