| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4455 |
|---|
| Symbol | |
|---|
| ID | 8022143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 1093752 |
|---|
| End bp | 1094399 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644833229 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_002984369 |
|---|
| Protein GI | 241666010 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0390638 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCGTC AAAGCCGCGA GCCGTCCGCT AAACGCTGGG TCCGACGCAA GAAAACCAGG
CCGCAAGAGC TGGTCTCCGC TGCGTTGGAC CTGTTCGTTG TGCGCGGCTG TGCGGCCACG
CGGCTGGAAG ATGTCGCCGC GGCCGCAGGG GTATCCAAAG GCACCGTCTA CCTGTATTTC
GCCGGCAAGG AAGATCTGTT CAAGGCAGTG ATCCAGGAAA ACCTCTTGCC AGTGCTGGCT
GAAGGCGAAG TCTTCATTGA TACCTTTCAA GGGACCAGCG AGGCGCTGCT GCACGAGATT
CTGATGCGCT GGTGGGAGCG AATTGGTGAA TCCGCTGCCT CGGGTCGGAC CAAACTGCTG
ATCGCCGAAT CGGGCAACTT CCCCGATCTC GTGCAGTACT ACAGCGTGGA AGTCATAGAG
CGCTACGATC GGCTGTTTGC TCGCATCCCG GCGCGCGGCG ATTTTCGAGA AACCGACGTG
CATCAGATCA CGTTGGCTCT GGTCCCACCG ATGCTGTTTC TGAAGATGTG GAAGCTCTCC
TTCGGCATCT GTGCAGCCAA GGCGCTGGAA CCGAAGGTGT TCATCACGCC AGTGCCGATG
CGGCGCTGCT CCTGCGCGAT CCGTTTCCGG ATACGGACAA CGCGTTGA
|
|---|
| Protein sequence | MKRQSREPSA KRWVRRKKTR PQELVSAALD LFVVRGCAAT RLEDVAAAAG VSKGTVYLYF
AGKEDLFKAV IQENLLPVLA EGEVFIDTFQ GTSEALLHEI LMRWWERIGE SAASGRTKLL
IAESGNFPDL VQYYSVEVIE RYDRLFARIP ARGDFRETDV HQITLALVPP MLFLKMWKLS
FGICAAKALE PKVFITPVPM RRCSCAIRFR IRTTR
|
|---|
| |