| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4391 |
|---|
| Symbol | |
|---|
| ID | 8022079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1021088 |
|---|
| End bp | 1022815 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644833166 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002984306 |
|---|
| Protein GI | 241665947 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.344697 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.796533 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCG CGGCCGCACC GTTTCACCAC GTACGTCACA ACACGGGCTC AACTTATCCG
GGGGTGGATT CGATGTCCGA AGCAGTCCTG CATCCATTTT TTTCGCGCGA GCGCACCGTC
GCCGCGGTTG GCTTCAACCG CTGGCTGGTT CCGCCTGCCG CACTGGCCAT CCATCTGTGC
ATTGGCATGG CCTACGGTTT TTCCGTCTTC TGGCTGCCGC TCGGCCGCGC GCTGGGCATC
ACCAAGCCGC TCACATGCGG CGCCGATGTC TCGCTGGTCG CCGAGCTGTT CACCACCACC
TGCGACTGGC GCGTCTCCAG CCTGGGCTGG ATGTTCACGC TGTTCTTCGT GTTCCTGGGC
GCATCCGCTG CCATGTGGGG CGGTTGGCTC GAACGCGTTG GCCCGCGCAA GGCTGGCGTC
GTGTCGGCTG TGTGCTGGTG CGGCGGGCTG CTAATTTCCG CACTGGGCAT CCAGATTCAC
CAACTGTGGC TGCTGTGGGT GGGCTCGGGC GTGATCGGCG GCGTCGGCCT GGGGCTGGGC
TACATCTCGC CCGTGTCGAC GCTCATCAAG TGGTTTCCGG ACAAGCGTGG CATGGCCACG
GGCATGGCCA TCATGGGTTT TGGCGGCGGC GCGATGATCG GCGCCCCGCT GGCTGACCGC
CTGATGAAGC TGTTTGCGAC GCCCGAATCT GTGGGCGTGT CGCAAACCTT TATTGTGCTG
GCCGGCATCT ACTTCGTGTT CATGATGGCA GGTGCGCTGG GTTACCGTGT GCCGCCCACG
GGCTGGAAAC CGGCAGGCTG GACACCCTCC CCGGCCAAGG CGAAGGACAC GATGGTCACG
CAACGCCATG TCCACGCAAA CGAAGCGCTG AAGACGCCGC AGTTCTGGCT GATCTGGGCC
GTGCTGTGCC TGAACGTATC GGCCGGTATT GGCGTGCTGG GCATGGCCTC GCCACTGCTG
CAGGAAGTGT TTGGCGGCAA GCTGCTGGGC GTGACGACGT CGTTCATGGA CCTGACCGCC
GCGCAAAAGG GCCAGATCGC AGCCATCGCT GCGGGCTTCA CGGGTCTGCT GAGCCTGTTC
AACATCGGCG GCCGTTTCTT CTGGGCGTCG CTCTCGGACC GCCTGGGCCG CAAGATGACC
TACGCGGTCT TCTTCGTGCT CGGCTTCGTG CTGTATGCGT CGATTCCGTG GACGTCGCAC
ACGGGCAATA TCGCGCTGTT CGCACTGGCC TTCTGCGTGA TCCTGTCGAT GTACGGCGGC
GGTTTTGCGA CCGTGCCGGC GTATCTGGCT GACATGTTCG GCACGCAAAT GGTGGGCGCC
ATCCACGGCC GGCTGCTCAC GGCGTGGTCG ACGGCCGGCA TCCTGGGCCC CGTGCTGGTG
AACTACCTGC GCGAATACCA GATCGCCCAT GGCGTGGAAC GCGCAGCCGT GTACGACATC
ACGATGATGA TCCTGGCCGG CCTGCTGATC CTCGGCTTCA TCTGCAACCT GCTAGTGCGC
CCTGTCAACG CGAAGCACTT CATGACCGAA GCGCAGCTCG ACGAGCAACG ACATGCTGCG
GCAACCAAGA GCCCAACGCC GTCGGTTGCT TCGCCGGAGA CGTCGCTGGA ATGGCAGGCG
CATCCGGGCT CGGCGGTAGC CGTGGTGCTG GCCTGGGCCG CCGTGGGCCT GCCGTTGGGC
TGGGGGGTTT GGATTACACT CCAAAAAGCT GCCGTTCTCT TCTCCTGA
|
|---|
| Protein sequence | MTGAAAPFHH VRHNTGSTYP GVDSMSEAVL HPFFSRERTV AAVGFNRWLV PPAALAIHLC
IGMAYGFSVF WLPLGRALGI TKPLTCGADV SLVAELFTTT CDWRVSSLGW MFTLFFVFLG
ASAAMWGGWL ERVGPRKAGV VSAVCWCGGL LISALGIQIH QLWLLWVGSG VIGGVGLGLG
YISPVSTLIK WFPDKRGMAT GMAIMGFGGG AMIGAPLADR LMKLFATPES VGVSQTFIVL
AGIYFVFMMA GALGYRVPPT GWKPAGWTPS PAKAKDTMVT QRHVHANEAL KTPQFWLIWA
VLCLNVSAGI GVLGMASPLL QEVFGGKLLG VTTSFMDLTA AQKGQIAAIA AGFTGLLSLF
NIGGRFFWAS LSDRLGRKMT YAVFFVLGFV LYASIPWTSH TGNIALFALA FCVILSMYGG
GFATVPAYLA DMFGTQMVGA IHGRLLTAWS TAGILGPVLV NYLREYQIAH GVERAAVYDI
TMMILAGLLI LGFICNLLVR PVNAKHFMTE AQLDEQRHAA ATKSPTPSVA SPETSLEWQA
HPGSAVAVVL AWAAVGLPLG WGVWITLQKA AVLFS
|
|---|
| |