Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4358 |
Symbol | |
ID | 8022046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 981003 |
End bp | 982367 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644833133 |
Product | type II and III secretion system protein |
Protein accession | YP_002984273 |
Protein GI | 241665914 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.970058 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGATG CCGCCATGGT TCGCGGTTGG ATGGGCGGAC TCGCGTTGGG CTGCGCCGCC TTCGTGTCGA GCGCATTTGC CGAGACGGCA CCGACCGGCC AGACGCTTCA TCTGCTGACG GGAAGCCAGC GCGAGATTCG CCTGGGCAAA CCGCTCGAAC GCATTGCCAT CGGCAACCCC GAGATTGCCG ATGCCCTGTT GCTCAAGGGG CGAGGTACGG CCACGAGCGT TTTGATCATC GCCAAGAAGC CGGGTGCGGC CAACGTGATG GTCTGGACGC AAGGCGGCGT TGCGACGACT TACAACGTGC AGGTGGACGC CGCGGCGCCT GTGCCGGGTG ACCCGGCAGT GGTTGCACAG GGCGATACGG CGGTTGTTTC AGGTCAGCCC AAGGATGTTT ACGCACTGGC CCGTGCGCGC CGTTCGGCCG CTGCAGCCAG CGGCGCAGAA AAACCTAAAG ATGGCAACGT CATCGACACC ACCTCGATGA ACGTGCCAGG TACGGTGCAA GTCGACGTGC GGGTAGTGGA GTTCAGCAAG ACGGTGCTCA AGGAGGCCGG GTTCACGTTT GGTCGTACGC GCGGCGGTTT CGATTTCCGG ACATTTGCGC CGTCGTCGCT CTCCAAGGTC ACGTTTGGCT CCAACGGTTT GTCTACCGAA TCCACCATGC CGATCGGTTC GGCGTTCAAC CTGCTGGTCT CCTCGGTCAG CAAGGGCCTC TTTGCCGACC TCAGCTTGCT GGAATCAAAC GGCATGGCGC GTGTGCTGGC CGAGCCAAGC CTGGTTGCCC TGTCAGGCCA GAGCGCCAAT TTCCTGGCCG GTGGCGAGAT TCCGATTCCC GTGCCCCAAG CGCTGGGTAC CACGACTATC GAATACAAGC CGTTCGGCAT CGGGCTGACG GTGTCGCCCA CCATTCTCTC GGAGAACCGC ATCGCGCTGA AGGTGGCGCC TGAAGCGAGC GATCTGGATT TCAGCCGAGG CGTGACGCTC AACGGTGCGA CGGTGCCGGC CATCGTCACG CGCCGTGCCG ATACAACAGT TGAACTTGGC GATGGCGAGA GCTTTGTCAT CGGCGGGCTG GTCAGCCGGT CCACGCTGTC CAACGTCGAC AAAGTGCCGT TCCTGGGTGA CGTGCCGATT ATCGGGACGT TCTTCAAGCG CCTGAACTAC AACCAGGAAG AGCGGGAACT GGTGATCATC GTCACGCCGC ATCTGGTCAA GCCGATGGCA CGCAATGCGC CGATCGACAA GATGCTGCCG GGACAGAGTA GCGGGCGGGA TCGCGATACC GCGGGCGATC CCGTGTGGCG GCCGTTCGCG CTGGGGGTGG CAGATCCGGC CGCCATGCCT GGGTTCTCGA AGTAA
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Protein sequence | MTDAAMVRGW MGGLALGCAA FVSSAFAETA PTGQTLHLLT GSQREIRLGK PLERIAIGNP EIADALLLKG RGTATSVLII AKKPGAANVM VWTQGGVATT YNVQVDAAAP VPGDPAVVAQ GDTAVVSGQP KDVYALARAR RSAAAASGAE KPKDGNVIDT TSMNVPGTVQ VDVRVVEFSK TVLKEAGFTF GRTRGGFDFR TFAPSSLSKV TFGSNGLSTE STMPIGSAFN LLVSSVSKGL FADLSLLESN GMARVLAEPS LVALSGQSAN FLAGGEIPIP VPQALGTTTI EYKPFGIGLT VSPTILSENR IALKVAPEAS DLDFSRGVTL NGATVPAIVT RRADTTVELG DGESFVIGGL VSRSTLSNVD KVPFLGDVPI IGTFFKRLNY NQEERELVII VTPHLVKPMA RNAPIDKMLP GQSSGRDRDT AGDPVWRPFA LGVADPAAMP GFSK
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