Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4077 |
Symbol | mdoD |
ID | 8021765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 665522 |
End bp | 667135 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644832858 |
Product | glucan biosynthesis protein D |
Protein accession | YP_002983998 |
Protein GI | 241665639 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.608962 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCACAC GTCGAACCCT TCTTGCCTCC GCCTCGGTTA CCGCCACGCT GGCGGCGCTC GGCATCACGC CCGAAGCACT GGCCGCCGAT CGCGTCAAGC TGGGCGATGC CGCGCCGTTT TCTTTCGATG CGCTGATCGA GCGCGCCCGC ACGATGGCCG GCAAGCCTTA CACGCCCCCT GCAACGGCGC CGGCCGACAT CCTGTCCAAG ATCGACTACG AGGCACACGG CAAGATCAAA TTCGACACCG CCCACGCACT CTTTGCGGAC GGCCCCGGCC AGTTTCCGGT GACGTTCTTC CACCTCGGCA CGTTCTTCCG CGCCCCGGTG CGCATGCACG TGGTGGAAAA AGGCGCCGCC CGCGAAATCG TTTACGACGA ATCGTACTTC GACATGCCCG CCGACAGCCC GGCGCGCAAA CTGCCGCGCG GCAGCGGCTT TGCCGGTTTC CGCTTCCAGG AAAGCCGCCT GGGTGACCAG AAGAAACTCG ACTGGAAGAA GAACGATTGG GTCGCCTTCC TGGGCGCGTC GTACTTCCGC GCCATCGGCG AGCTGTATCA GTACGGGCTT TCCGCACGGG GCATTGCGCT GGACGTGGCG CAGGCCGGCA AGCCGGAAGA GTTTCCCAAT TTCACGCACG TGTGGTTCGA CACGCCGGCA GACAACCGCG CCGATTCCGT GACGATCTAC ACGCTGCTCG ACGGCCCGAG CATCACGGGT GCATATCGCT TTGTCATGCA CCGCACGAAG GGCGTGGTGA TGGACATCGA CACGGCCATC TTCCTGCGCA AGGACGTCGA CCGTTTCGGC ATCGCGCCCG CCACGTCGAT GTACTGGTTT TCGGAAACCG CCAAGGGCAC CGCCACTGAC TGGCGCCCCG AGGTGCACGA CTCCGACGGC CTCGCCCTCT GGACCGGCAA TGGCGAGCGC ATCTGGCGCC CGCTGAATGA TCCGCCGCGC ACGATGGCGT CTGCCTTTGG CGACAACAAC CCGCGCGGCT TCGGCCTGCT GCAGCGCGAT CGCGATTTCA ACAACTACCA GGACGGCGTC CACTACGAGC GCCGCCCGAG CCTGTGGGTC GAGCCGCTGG AAGGCTGGGG CGAGGGCGCC GTGCAGCTTA TCGAAATCCC GACCGACGAC GAGATCCACG ACAACATCGT CGCCATGTGG GTGCCGAAGG CACCGGCGCG TGCGGGCAGC CAGTACCGTC TACGCTATCG CCTGCACTGG CTGGCCGATG AACCGTATCC GACACAACTG GCGCGCTGCG TGGCCACGCG CATGGGCAAC GGCGGGCAGC CGGGCCAGCC GCGGCCGCGC GGCGTGCGCA AATTCATGGT CGAGTTCAAG GGCGGTCCGC TGGAGAAACT GCCTTTCGGC ACCAAGCCGG AGGCCGTGCT GAGCACCTCG CGCGGCACGT TCTCGTATGT GTTTACCGAA GCCGTGCCGA ACGGCGTGCC GGGCCACTGG CGCGCCCAGT TCGACCTGAC GGTCGACGGG AAGGAACCGG TCGACATGCG GCTGTTTTTG CGTGTGGATG GCAAGCCGCT GTCCGAGACG TGGCTGTATC AATATCACCC GTTCCAATCG CCGGTGGGGC CAGTGGCGTC CTAA
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Protein sequence | MVTRRTLLAS ASVTATLAAL GITPEALAAD RVKLGDAAPF SFDALIERAR TMAGKPYTPP ATAPADILSK IDYEAHGKIK FDTAHALFAD GPGQFPVTFF HLGTFFRAPV RMHVVEKGAA REIVYDESYF DMPADSPARK LPRGSGFAGF RFQESRLGDQ KKLDWKKNDW VAFLGASYFR AIGELYQYGL SARGIALDVA QAGKPEEFPN FTHVWFDTPA DNRADSVTIY TLLDGPSITG AYRFVMHRTK GVVMDIDTAI FLRKDVDRFG IAPATSMYWF SETAKGTATD WRPEVHDSDG LALWTGNGER IWRPLNDPPR TMASAFGDNN PRGFGLLQRD RDFNNYQDGV HYERRPSLWV EPLEGWGEGA VQLIEIPTDD EIHDNIVAMW VPKAPARAGS QYRLRYRLHW LADEPYPTQL ARCVATRMGN GGQPGQPRPR GVRKFMVEFK GGPLEKLPFG TKPEAVLSTS RGTFSYVFTE AVPNGVPGHW RAQFDLTVDG KEPVDMRLFL RVDGKPLSET WLYQYHPFQS PVGPVAS
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