| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3939 |
|---|
| Symbol | |
|---|
| ID | 8021627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 518254 |
|---|
| End bp | 518757 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644832728 |
|---|
| Product | Protein-tyrosine phosphatase, low molecular weight |
|---|
| Protein accession | YP_002983868 |
|---|
| Protein GI | 241665509 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0394] Protein-tyrosine-phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.117198 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACC ACACCACTAA CGTCCTGATC CTCTGCACCC ACAACTCCGC ACGCAGCGTA
CTGAGCGAAG GCATGCTCAA CCATTGGGCG CGGACGCTGG GCAAGGATGT CCGCGCCTAC
AGCGCGGGCA GCGCGCCCAG CGGGCGAATC AACCCATTCG CCGTCGAGGC GTTGGAACAA
GCCGGCGTCG ACACCACGGG CTATCGCAGC AAGAGCTGGG ACGAGTTCGT CGCCGACGGC
GCGCCGCAGA TGCGCATCGT CATCACCGTC TGCGACAGCG CCGCGGCCGA GACCTGCCCG
TACTGGCCCG GCAGCCCCGT GAAGGTGCAT TGGGGCTACC CCGATCCATC CAACGCGCAG
GGCGGTGACG CGGGCAAACG GCAGGCTTTC GAGTTGACGC GCCAGGCCAT CGGATACCGC
ATGCTGCAAC TGCTGATGCT GCCGCTCGAC ACGCTCGACA ACGCTGCGTT GCAGGCGCAT
CTCGACCGTA TCTCGCAAAG CTGA
|
|---|
| Protein sequence | MADHTTNVLI LCTHNSARSV LSEGMLNHWA RTLGKDVRAY SAGSAPSGRI NPFAVEALEQ
AGVDTTGYRS KSWDEFVADG APQMRIVITV CDSAAAETCP YWPGSPVKVH WGYPDPSNAQ
GGDAGKRQAF ELTRQAIGYR MLQLLMLPLD TLDNAALQAH LDRISQS
|
|---|
| |