Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3882 |
Symbol | |
ID | 8021569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 452057 |
End bp | 453559 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644832670 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_002983811 |
Protein GI | 241665452 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAAGG CCGCTCTGGA AATGCGTGCG AAGCAGCATC TCGCGCTGAC GCCGCGGCTG CAGCAGTCCG TCAAGCTGCT GCAGTTATCC GCAACCGAAT TTGCGCAGGA AATGCAAGAA GCGCTCGCAA GCAACCCGTT CCTGGAGGAG GTCGAGCAAG AAGCCGGTGC GCAGCCGGAT GCGACCCGTG CGAACGACCT GCCCGGCCCG GCAGACCTGG ATGGCAGCGG CACCGACCAC ACGCCGTCCG AAGCATTGCC GCTGGAAACC ACCACGAGCG CCATCGAGAC CGACCCGGCG CTTGCCACAG CAGATGAGTT TCCTGCCGAT TTCGGCACGT ACTACAGCCA TGGCGGCGCA CACCATGGCG ACGGCGAAGA CAGCGACATT GGCGAATGGG TGCACGCCAC GCCAAGCCTG CGCGAACATC TGCACCAGGA GTTGCGCAGC TACCGCCTGT CGCAGCGTGA TTGCCTGCTG GGGCAGACGG TGATCGAGGC GCTTGACGAC GACGGCTACC TGCGCCAACT GCTCTCCGAA CTCATTCCGC TTGCGCCGGT GGAACCTCCG CCAACCGAGA AGGAAATGCA GATCGCCCTG GCGCTCGTGC AGAGCCTCGA TCCCCCGGGC GTGGCGGCGC GCGACCTGTC TGAATGCCTG CGTCTGCAGA TCGAGGCGCG GCCCGCCGAC ACCGAGGCCG AGGAGCGCAT CCAGGAGGTC GCCCACGACA TCGTGCGCAG CCACCTGCCC CGCCTCGCCA AGCGCGAATT CACACAGATG CGCCGCGCGC TCGGCTGCAC GGAAGATGAG CTTCGCGATG CCTGCGCGCT CATTCGCATG CTCGACCCAC GCCCGGGACT GCGCTTCTCG CAAGCACACG CGGGCTACAT CGTGCCCGAT GTGATCGTCG CCAAGATCCG GGGCAAGTGG ATCGCGGTGA CCAACCCGGC GGTAGCGCCC TGCGCGCGCA TCAACAAGGT CTATGCCGAA CTGTTTGCCC AGACGCGCGG CTACCATCGC ACACCGCTGG CGCACCAGCT GCAGGAAGCG CGCTGGCTCA TCCGCAACGC GCAGCAGCGC TTCGCCACGA TCCAACGCGT GGCGGAGGCG ATCGTCGCGC ATCAGAAGCA TTTCCTGGAG TACGGCGAAG TGGCCATGAA ACCGCTGGTG CTGCGCGATG TGGCCGAAGA ACTGGGCTTG CATGAGTCCA CCATTTCACG CGCGACCGGT AACAAGTACA TGGCCACGCC GCGCGGTATC TTCGAATTCA AGTATTTCTT CTCCCGGCAA CTGGCCACCG ACACGGGCGG CGCATGCTCG GCTGCCTCGG TGCGGGCGCT GCTCAAGGAG ATGATCGAGG CCGAAGACGC CGACGCACCG CTCTCCGACG TGTCGCTGGC CAAGATGCTG GCCGAGCAGG GTGTGATCGT CGCGCGCCGC ACGGTCGCCA AGTACCGTGG GCTGATGCGC ATTGCGCCGG CGGAAATGCG CCGCCAGGTC TGA
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Protein sequence | MVKAALEMRA KQHLALTPRL QQSVKLLQLS ATEFAQEMQE ALASNPFLEE VEQEAGAQPD ATRANDLPGP ADLDGSGTDH TPSEALPLET TTSAIETDPA LATADEFPAD FGTYYSHGGA HHGDGEDSDI GEWVHATPSL REHLHQELRS YRLSQRDCLL GQTVIEALDD DGYLRQLLSE LIPLAPVEPP PTEKEMQIAL ALVQSLDPPG VAARDLSECL RLQIEARPAD TEAEERIQEV AHDIVRSHLP RLAKREFTQM RRALGCTEDE LRDACALIRM LDPRPGLRFS QAHAGYIVPD VIVAKIRGKW IAVTNPAVAP CARINKVYAE LFAQTRGYHR TPLAHQLQEA RWLIRNAQQR FATIQRVAEA IVAHQKHFLE YGEVAMKPLV LRDVAEELGL HESTISRATG NKYMATPRGI FEFKYFFSRQ LATDTGGACS AASVRALLKE MIEAEDADAP LSDVSLAKML AEQGVIVARR TVAKYRGLMR IAPAEMRRQV
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