| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3777 |
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| Symbol | |
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| ID | 8021464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 340655 |
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| End bp | 342439 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644832567 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002983708 |
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| Protein GI | 241665349 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCAT CGCCGCTTCC CTTGCCGCCG GGTATCGCCC CCGAGATGCT GCGCACGGTG
TTCCAGCCGA TCTTCCGACT GTCCACCGCC GAAGTCTTCG GCTACGAGGC CCTGCTGCGC
GGGCCGGCGG GCTCGACCTT GGAGTCACCC GCCGCGCTGT TCGCGGCAGC CACCGACACG
GCAGGGGCGA TCGCGCTGGA GACGACCGCA GCGCGGCTGG CGATCGAACG GTTCTCGGCC
ATGCGGCTGC CGGGCAAGCT GTTCCTCAAC TTCAGTGCCT TCGGGGTGCA CGAGTTGCTG
CAAGACCATG CCCGCCTGCT GCACGCCATC GCCGACCACG ACCTGCAGCC CTCGCGCATT
GTCATCGAGC TGACCGAACA GACACCCATC GACGACCTCG CGAGCTTTGC CAACGCGCTC
TCGGTCGCCC GTGACTTTGG CATGCAATGC GCCCTCGACG ATTTCGGCAC AGGCAACGCC
AACCTGAACC TGCTGATCGA GTTGACGCCC GACTTCGTCA AACTGGACAA GTATTTTCTG
CGCGACATAG CGAAGCATCC GGCAAAGCTG GAGATGACCC GCTCGCTGCA ACAGACGCTC
AAGGGCAGCG CGACGAGCAT CATTGCCGAA GGGCTCGAGA CCGAGGATGA GCTGGGTGTG
GTGCGCGACC TCGGCATCCG CTTCGGGCAG GGTTTCTTCC TGGCAAGGCC ACTCGACAAG
CCGGCCGAGG ATATGTCGAG CCACGCGGCA CGCGTGCTGC AGTCATCGCA GATTGCCGTC
TTTCCGCAGG CGGTGCGGGT GGGATGGCGC GCCATCACGG CAGGCAAGCT GCTGCGTGTC
GCGCCCACCC TGCCCCTGCG CTGCAGCAAT GACGACGTGC TCCACCTGTT CAACCGCCAC
CCCGACCTGC ACGCCGTGGC GTTGCTCGAC GAAGACGAGC GGCCGCTGGC CCTGATCGCG
CGCCGCGCCT TCATCGACCG CTATGCGATG CCCTATCACC GCGAGCTGTA CGGCAAGAAG
CCGGCGCTGG CGTTTGCCAA CCGGCAGCCG GTACTGGTGG AAAAATCCGC TTCGCTCGAA
GATATGTCCG CACTGCTGAT GAGCGAAGAC CAGCGCTACC TGACCGACGG CTTCATCATC
ACCGAGCACG GCCGGTATCT GGGCCTGGGC ACCGGCGAAG AACTGGTACG CACCGTCACC
GAGATCCGCA TCGAAGCCGC GCGCTACGCC AACCCGCTCA CGTTCCTGCC CGGCAACATT
CCGCTGAACC TGCACATTGA GCGCCTGCTG GAGGCACGTA CGGCGTTCTA CGCCTGTTAT
GTGGATCTGA ATCACTTCAA ACCCTTCAAC GACCAGTACG GCTACTGGCA GGGCGACGAA
ATGCTGAAGA TGGCCGCCGC CGCGCTGGCT GACGCATGCG AGCCCACACG CGACTTTCTC
GGCCACGTCG GCGGCGACGA CTTCCTGATC CTGTTCCAGA GCGCCGACTG GCGCACCCGC
ATCGAACAGG CCATCACAAT CTTCAACACG AACGCGCTGG CCATGTACAC CCCGGCCGAT
CGCGCCGCCG GCGGCATCCA CGCCGAAGAC CGCAAGGGGT TGCCGGCGTT CTTCCGCTTC
GTGACGATGG CGGTGGGCGC ACTGCATGTC CTTCCGGGGG CCGCGCGCAA CAGCGACGAC
ATCGGCACGG CGGCCGCGCT GGCCAAGCGT CGCGCCAAGC AAAGCGACAA CGGCTTCCAT
ATCGAAGCAC TGCGGCCGAC GCTGCCCGTG CCAGCCACGG CCTAG
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| Protein sequence | MTSSPLPLPP GIAPEMLRTV FQPIFRLSTA EVFGYEALLR GPAGSTLESP AALFAAATDT
AGAIALETTA ARLAIERFSA MRLPGKLFLN FSAFGVHELL QDHARLLHAI ADHDLQPSRI
VIELTEQTPI DDLASFANAL SVARDFGMQC ALDDFGTGNA NLNLLIELTP DFVKLDKYFL
RDIAKHPAKL EMTRSLQQTL KGSATSIIAE GLETEDELGV VRDLGIRFGQ GFFLARPLDK
PAEDMSSHAA RVLQSSQIAV FPQAVRVGWR AITAGKLLRV APTLPLRCSN DDVLHLFNRH
PDLHAVALLD EDERPLALIA RRAFIDRYAM PYHRELYGKK PALAFANRQP VLVEKSASLE
DMSALLMSED QRYLTDGFII TEHGRYLGLG TGEELVRTVT EIRIEAARYA NPLTFLPGNI
PLNLHIERLL EARTAFYACY VDLNHFKPFN DQYGYWQGDE MLKMAAAALA DACEPTRDFL
GHVGGDDFLI LFQSADWRTR IEQAITIFNT NALAMYTPAD RAAGGIHAED RKGLPAFFRF
VTMAVGALHV LPGAARNSDD IGTAAALAKR RAKQSDNGFH IEALRPTLPV PATA
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