Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3606 |
Symbol | |
ID | 8021293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 162642 |
End bp | 163862 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644832397 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_002983538 |
Protein GI | 241665179 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.335838 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.676056 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACGCC CGAGCCATCG CGTTGCCTCC CGAACCCATG AATCCAGCCT CACCATGAAC GCACCTGCTT CCTTCTCTTC TTCGATCCGG CTGGCCGGCG TTGCCCTTGC AGCGATGTTG TTGCTTGGCG CCTGCGGCAA AGATGCCGCC AACGATGCCA AGGCCGCGCA ACAGGCCGTC GACCCGAATC TCGTGGTTGC ACAGCCCACG CTGGTGCAGC GCCTGAAAGT GGCGCCGGTG GGCAAGCAGC CGATTGCCGA GCGCTTGCGC GTGCCGGGGC AGATCGCGTT TGACGAACAG CGCGTGGCGC GTATCGGTGC CACCGTCACG GGTCGTGTGA CGGAGCTGGT CGCCACGCCG GGGCAGAGCG TCAAGGCGGG CGACATCCTC GCGCAACTGC ACAGCACCGA GCTTGGCGCC GCGCAGCTCG CCTACCAGAA GGCTGCTGCG CAGCGTGATT TGCAGGCGCG TGCGCTGGGA CGCGCCAAGC TGTTGCTGGC CGCCGACGTG ATCGGCTCGG CCGAACTCCA GAAGCGCCAG AGCGAACTCG CAATGGCCGA TGCCGAAGTG CGCGCGGCCA TCGACCAGTT GCGCGTGATG GGCGTATCGC CCGGCACGCT GGCGAAGATG CGCACCGGCG GCATGTCATC GATCTCACCC GTGGTGGCAA GCATCAGCGG CACGGTGGTG GACCGCAAGG TAACGCGCGG CCAGGTGGTG CAGCCGGCCG ACGAGCTGTT CACCGTGGCC GATCTGTCGC GCGTGTGGGT GGTGGGTGAA GTGCCCGAAA ACGCCGCTGC CGGCGTGCGT GCAGGGCAGG CCGTGGAGAT CGACACCGGC GCGGGCGACC GCATTGTCGG CAAGCTGATC TGGGTGTCGG ACATTGTCGA CCCGCAAACG CGTACGGTCA CGGTGCGCAC CGAAGTGGAC AACGCAGAGC GCACGCTCAA GCCGTCGATG CTGGCCACGC TGCTCATCCA GTCGCGCCCG GAAGAGCGCG TGGTGGTGCC GACGTCCGCC GTGGTGCGTG AAGACAACCG CGACTACGTA TTCGTGCGCG CCAGCGAGAC GAATTACCAG CTCACACCAG TCAAGCTGGG CGATGAGTCA AACGGTGTGC GCCCGGTCAT TTCCGGCGTG CAGGCCGGGC AGCCGATCGT CGTTGAAGGC GGCTTCCATC TGAACAATGA GCGCAAGCGC GCCGAGATGG AGGGCGCATG A
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Protein sequence | MTRPSHRVAS RTHESSLTMN APASFSSSIR LAGVALAAML LLGACGKDAA NDAKAAQQAV DPNLVVAQPT LVQRLKVAPV GKQPIAERLR VPGQIAFDEQ RVARIGATVT GRVTELVATP GQSVKAGDIL AQLHSTELGA AQLAYQKAAA QRDLQARALG RAKLLLAADV IGSAELQKRQ SELAMADAEV RAAIDQLRVM GVSPGTLAKM RTGGMSSISP VVASISGTVV DRKVTRGQVV QPADELFTVA DLSRVWVVGE VPENAAAGVR AGQAVEIDTG AGDRIVGKLI WVSDIVDPQT RTVTVRTEVD NAERTLKPSM LATLLIQSRP EERVVVPTSA VVREDNRDYV FVRASETNYQ LTPVKLGDES NGVRPVISGV QAGQPIVVEG GFHLNNERKR AEMEGA
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