| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3536 |
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| Symbol | |
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| ID | 8021223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 80217 |
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| End bp | 81980 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644832327 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002983468 |
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| Protein GI | 241665109 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.220147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATTG CGGACTGCAT GGAGAACGGG CTTCTGCACA CCGTATTTCA GCCCATCGCA
AACCTGCCTT CCGGCGAGTT GCTCGGCTAT GAGGCACTGA TTCGCGGACC TGCCGGTTCC
CCGCTCGAGC GTCCGCAGGC GCTCTTCGAA CAGGCGCAGC GCGAGCACTG CGTCATCCAG
CTCGAGCGAT TCGCGGCACG GTTGAGCATC GAAACCTTCG GGCAGCTGAA GCTGCCGGGC
AAGCTGTTTC TGAACCTGAG CGCGGATGCC ATCCGCGAAA TCGACCACTG CGAAGACGAT
GTACGCGCCT TCATGAGTCG CCAGCAATTT GCCTTCTCTA GAATCGTCAT CGAACTCACC
GAGCAAGCGA GCCCAATGCC CCTGGACTCG CTTGAAGCGT CGCTGCGGCG TATTCGAGAA
GCCGGCGCCC AGCTTGCGCT GGATGACTAC GGAACGGGAA ACGCCAACCT TAGCCTGTGG
ATTGCCCTGC AACCCGACTA CGTCAAGATT GACCGGTCCA TTGTCGATGG GGCCGCGCGT
TCTGCCTTCC GTCTTGAAGC GCTGCGCTAC CTGAAGGGAC TCGCGACCGC GAGCCATGCC
CTGTTGATTG CCGAGGGCCT CGAGAATCTC GACGACTTAC GGGTCTGCCG CGATATCGGC
ATCGAATGTG CCCAAGGCTT CGTCTTCGGC AGGCCGAGTA CCGCGCCGGG GCACAGCGTG
CAGGGGCCTG CGCTGGAAGC CATCAAGGCC AATGTGATTG CCGTGTTTCC GGAAACGGTC
AAAGTCCCGC AACGTGCTTT TTCAGCAAGC CGGTTGTTGA TCAAGGCGCC GAGCGTGTCG
CCCTCCGCAT TGAATAACGA CGTGCTGGAC GTGTTTACCA GGCACCCCGC GCTCCACGCC
GTTGCCGTTG TCGAGCAAGG GCGAACCGTC GGCCTCATCA ACAGGCATAC CTTCGTGGAT
GCGTATGCGC ACCCGTATCA CCGGGAGCTC TATGGCAGGA AGAGTTGCAT GGAGTTCGCG
AACACCTCTC CCGTGGTCGT GGAAAGAAGC GCGACGATGG AGGCGCTGGC AAATGTGCTG
ACCGCGCAGG ACCAGCGGTA TCTCACCCAA GGGTTGGTCA TCGTTGAGCA GGGCCAGTAT
GTTGGCCTGG CGACGGGCGA AGCATTGGTC CGTGCCGTTA CGGAAATACG GATTGAAGCG
GCACGCTACG CGAATCCGCT CACGTTCCTG CCGGGCAATA TTCCCATCGA TGCGCATATC
AAGCGGCTGC TGGCAAGCCA AGTGCCGTTT CATGCGTGCT ATTGCGACCT GAACAGTTTC
AAGCCGTTCA ATGATCAGTA CGGCTATTGG CATGGCGATG AAATGCTGAA ACTGGCCGCA
GCAACCCTGA CACAGGCGTG CGCGCCTCAG AAGGACTTTC TGGGGCACGT GGGCGGGGAC
GACTTCCTGA TTCTTTTCCA AAGCGACGAT TGGGAGCGCC GGATCCGCGA GGCGATGACG
CAATTCGATG CCAGGGCTGT CCAGCTATAC ACACCCGCGG ATATCGCGGC GGGCGGCATC
CGGAGCGAGG ACCGCCACGG CGATCTGCGT TTCTACGGCT TCGTATCGAT TGCGGTCGGC
GTGGTCCCCA TCCAGGCGGG CGCCGCCGTC GATGGCGACA CCATCGCAAC CTTGGCCGCG
GCTGCAAAGC GCGAGGCCAA GCGATCCGCC GAGAACTTCT TCATCTGGCG CGACGACGCG
CTGGACCCTG CACGCAATGC CTGA
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| Protein sequence | MSIADCMENG LLHTVFQPIA NLPSGELLGY EALIRGPAGS PLERPQALFE QAQREHCVIQ
LERFAARLSI ETFGQLKLPG KLFLNLSADA IREIDHCEDD VRAFMSRQQF AFSRIVIELT
EQASPMPLDS LEASLRRIRE AGAQLALDDY GTGNANLSLW IALQPDYVKI DRSIVDGAAR
SAFRLEALRY LKGLATASHA LLIAEGLENL DDLRVCRDIG IECAQGFVFG RPSTAPGHSV
QGPALEAIKA NVIAVFPETV KVPQRAFSAS RLLIKAPSVS PSALNNDVLD VFTRHPALHA
VAVVEQGRTV GLINRHTFVD AYAHPYHREL YGRKSCMEFA NTSPVVVERS ATMEALANVL
TAQDQRYLTQ GLVIVEQGQY VGLATGEALV RAVTEIRIEA ARYANPLTFL PGNIPIDAHI
KRLLASQVPF HACYCDLNSF KPFNDQYGYW HGDEMLKLAA ATLTQACAPQ KDFLGHVGGD
DFLILFQSDD WERRIREAMT QFDARAVQLY TPADIAAGGI RSEDRHGDLR FYGFVSIAVG
VVPIQAGAAV DGDTIATLAA AAKREAKRSA ENFFIWRDDA LDPARNA
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