Gene Rpic12D_3396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3396 
SymbolslmA 
ID8021081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3584193 
End bp3584843 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content64% 
IMG OID644832190 
Productnucleoid occlusion protein 
Protein accessionYP_002983332 
Protein GI241664972 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACG CGCAAACCGA GTTTCCGACC GCCGAGCCGG TCGCGGACGT CGCCATAGCA 
GCACCGCCGG TACGCAAACG CCCCCGCCCG GGCGAGCGCC GTGTGCAGAT TCTGCAAACG
CTCGCCGGTA TGCTCGAGCA TCCGCGTGGT GAAAAGATCA CAACTGCAGG CCTGGCTGCA
CGGCTGGATG TCTCCGAAGC GGCGCTCTAT CGTCACTTCG CCAGCAAGGC GCAGATGTTC
GAAGGGCTGA TCGAATTTAT CGAGCAGACC GTCTTTGGCC TCATCAACCA GATCACGCTG
CGCGAAGAAC ACGGTTTGCG CCAGGCGCAT GCCATCGCGC ACATGCTGCT GTCGTTTGCC
GACAAGAATC CGGGCATGAC GCGCGTGCTG GTGGGCGATG CGCTGGTCGG CGAAGATGAG
CGCCTGCCCG AGCGCATGGC GCAGTGCCTG GATCGCATCG AGGCGTCGCT CAAACAGAGT
CTGCGTATCG CGGTCACGCA GGGTGCTTGG CCTGCGGATA CCGACATCGC ATCGCGCGCC
AACCTGCTCG TGTGTGCAGT GCTCGGCCGC TGGCATCGGT ATGCGAAGAG CGGTTTCCGG
AAGTCTCCAG TGGAAGGCGC GGATGCGCAG TTGCGGGTGC TGCTGGCCTG A
 
Protein sequence
MSNAQTEFPT AEPVADVAIA APPVRKRPRP GERRVQILQT LAGMLEHPRG EKITTAGLAA 
RLDVSEAALY RHFASKAQMF EGLIEFIEQT VFGLINQITL REEHGLRQAH AIAHMLLSFA
DKNPGMTRVL VGDALVGEDE RLPERMAQCL DRIEASLKQS LRIAVTQGAW PADTDIASRA
NLLVCAVLGR WHRYAKSGFR KSPVEGADAQ LRVLLA