| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2949 |
|---|
| Symbol | rplD |
|---|
| ID | 8020621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 3095082 |
|---|
| End bp | 3095702 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644831736 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_002982891 |
|---|
| Protein GI | 241664531 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000339858 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000135415 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGA AGCTGCTCCA GGACAACGGT CAACTCGGCG CCGGCGTTGC TGCCTCGCCG
GAAGTGTTCG GCCGTGACTA CAACGAAGCC CTCGTTCACC AAGTCGTCGT CGCTTACCAG
GCCAACGCTC GCAGCGGTAA CCGTAAGCAG AAGGACCGTG AAGAGGTCAA GCACACGACC
AAGAAGCCGT GGCGTCAAAA GGGTACGGGC CGCGCCCGTG CAGGTATGAG CTCCTCCCCG
CTGTGGCGCG GGGGTGGTCG TATCTTCCCG AACAGCCCGG AAGAAAACTT CTCGCAGAAG
GTCAACAAGA AGATGTACCG CGCCGGCATG CGCTCGATTT ATTCGCAGCT CGCCCGTGAA
GGTCGCATCA ACGTCGTTGA CAGCCTGTCC GTCGACGCGC CCAAAACCAA GCTGCTGGCC
GACAAGTTCC GCGCCATGGG CCTGGATTCG GTGCTCGTGA TTACCGATAA CCTGGACGAA
AACCTCTTCC TGGCATCGCG CAACCTGGCG CACGTGCTCG TGGTTGAGCC GCGTCACGCC
GACCCGCTGT CGCTCGTGCA CTACAAGAAG GTGCTCGTGA CCAAGGCAGC CGTCGCGCAG
ATCGAGGAGT TGCTGAAATG A
|
|---|
| Protein sequence | MELKLLQDNG QLGAGVAASP EVFGRDYNEA LVHQVVVAYQ ANARSGNRKQ KDREEVKHTT
KKPWRQKGTG RARAGMSSSP LWRGGGRIFP NSPEENFSQK VNKKMYRAGM RSIYSQLARE
GRINVVDSLS VDAPKTKLLA DKFRAMGLDS VLVITDNLDE NLFLASRNLA HVLVVEPRHA
DPLSLVHYKK VLVTKAAVAQ IEELLK
|
|---|
| |