Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2907 |
Symbol | |
ID | 8020579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 3065161 |
End bp | 3067494 |
Gene Length | 2334 bp |
Protein Length | 777 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644831694 |
Product | penicillin-binding protein, 1A family |
Protein accession | YP_002982849 |
Protein GI | 241664489 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0114663 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGGCC TGTTCGTTGC GATGGGGGTC GTCGGGGCGC TGCTGCTGGG CTATGCCCTG CTCGTCGCCG CGCCCAACCT GCCGTCGCTC GACGCCATCA CCGATTACCG TCCGAAGATT CCGCTGCGCG TCTACACCGC CGATAACGTC CTCATCGGTG AATTCGGTGA GGAGCGCCGC AGCTTCGTAC CGATCACGCA GATGCCCGAT GTGATGAAGC GCGCGGTCCT GGCGATCGAA GACGACCGCT TCTACGAACA CGGCGGCGTC GACTTCATCG GCGTGCTGCG CGCGGGCCTG GCGAACCTGC ATGGCGGTCT CTCTCAAGGT GCGTCGACCA TCACGATGCA GGTGGCGCGC AACTTCTTCC TGTCGAGCGA GAAGACGTAC ACGCGCAAGA TTTACGAGAT CTTGCTCTCG TACAAGATCG AGGCGAGCCT GACAAAGGAT CAGATCCTCG AGCTGTACAT GAACCAGATC TACCTGGGCC AGCGTGCATA CGGCTTTGCC AGCGCCGAGC AGATCTACTT CGGCAAGAAC ATCAAGGACA TCACCCTGGC CGAAGCGGCC ATGCTGGCCG GCCTGCCCAA GGCGCCATCG GCGTACAACC CCGTGGTGAA CCCCAAGCGC GCCAAGGTGC GTCAGGAGTA CATCCTGCAA CGCATGCGCG ACCTGCACTA CATCACGCCG GAGCAGTACA CCCAGGCTGT CAATGAGCAA CTGCCGGTGC GTGGCGAGGG CCATGAGTTC GACGTGCACG CCGAATACGT GGCCGAAATG GTACGCCAGC TCATGTACGC GCAATACCGC GAAGAAACCT ACACGCGCGG GCTGAACGTC TACACCACGC TGCGCAAGGC CGACCAGGAC GTCGCCTATC AATCCGTGCG CCGCGGCATT CTCGATTACG AGCGCCGTCA CGGCTATCGC GGCCCTGAAG CGTTCATCGA CCTGCCCTCC GATGCAGAGG AGCGTGAACA GGCCATCGAC GACGCCCTGC TGGAACACCC GAACAGCGAC GATCTGCAAT CGGCCGTGGT GGTGAGCGTG ACACCCAAGC TGGTGCGCGC GACGATGCTG ACCGGTGAGA CGATCGACCT GGCAGGCGAC GGCCTGCGCT TTGCACAGGC GGCCCTGTCG AACAATGCAC AGCCCAAGAT CAAGCTGCGC CCGGGCGCGG TGATCCGTGT GATCGAGGAC ACGAAGACGC AGAAGTGGTC GATCACGCAA TTGCCGGAAG TGGCCTCGGG TTTCATCTCG CTGGATCCGC AGACGGGCGC GATCTACTCG ATGGTGGGTG GCTTCGATTT CAACCGCAGC AAGTTCAACC ACGTCACGCA GGCCTGGCGC CAGCCGGGTT CGAGCTTCAA GCCGTTCATC TACTCGGCGG CGGTGGACAA GGGTTTCTCG CCGTCTACGG TCATCAACGA CGCGCCGCTC TCGATCCCGA CCGGCGACAC GGGCGGCCAG GTGTGGGAGC CGAAGAACTA CGGCGGCGGC TATGACGGCC CGATGACGAT GCGCCGCGCG CTGCAGAAAT CGAAGAACCT GGTGTCGGTG CGGATCCTGC GCGCGATTGG TACGCAGTAC GCGCAGCAGT ACATCACCCG CTTCGGCTTC GACGCCGATC GGCACCCGGC CTATCTGCCG ATGGCGCTGG GCGCAGGCTC GGTGACGATG CTGCAGATGG CGAGCGGCTA CTCGGTGTTC GCCAACGGCG GCTACCGCGT GAACCCGTAC ATCATCGATC GCGTGGTGGA TGCGCGCGGC ACGGTCGTCC AGCAAAGCCA TCCGATGACC GCCGGCAAGG ACGCCGTGCG CGTGATCGAT CCGCGCAACG ATTTCATCAT GGATTCACTG CTGCGCAGCG TGGTGTCGAA CGGCACGGGC TACCAGGCCA AGGTCAAGCT GGGCCGCAAC GACATGGCAG GCAAGACCGG CACCACCAAC GACTCGTTCG ACGCCTGGTT TTGCGGCTAC ACGCCCAAGC TGGTCGGCGT GGCCTGGATG GGCTACGACA ACCCGCGCAG CCTGGGGGAT CGCGAAACCG GTGGCGGCCT GGCCCTGCCG ATCTGGATCA ACTACATGAG CTACGCGCTC AAGGGCGAAC CCCAGACCGA GCGCCAGCCG CCCGAAGGCG TCGTGCAGAT GGCCGGCGAC TGGGCTTACG AGGAATACGC CAACGGCCAG GGCGTGGCCT CGGTTGGCCT GGGCGATGCG ATGCCGGGAG GCTCCGCACC GGCCGGCGAT CAATCGCAAC AGCCTGGCAT CAACCTGGCG CCGACGCAGG AACAGGAGAA ACAGAAGATT CTCGACATGT TCCGCGGCAA CTGA
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Protein sequence | MLGLFVAMGV VGALLLGYAL LVAAPNLPSL DAITDYRPKI PLRVYTADNV LIGEFGEERR SFVPITQMPD VMKRAVLAIE DDRFYEHGGV DFIGVLRAGL ANLHGGLSQG ASTITMQVAR NFFLSSEKTY TRKIYEILLS YKIEASLTKD QILELYMNQI YLGQRAYGFA SAEQIYFGKN IKDITLAEAA MLAGLPKAPS AYNPVVNPKR AKVRQEYILQ RMRDLHYITP EQYTQAVNEQ LPVRGEGHEF DVHAEYVAEM VRQLMYAQYR EETYTRGLNV YTTLRKADQD VAYQSVRRGI LDYERRHGYR GPEAFIDLPS DAEEREQAID DALLEHPNSD DLQSAVVVSV TPKLVRATML TGETIDLAGD GLRFAQAALS NNAQPKIKLR PGAVIRVIED TKTQKWSITQ LPEVASGFIS LDPQTGAIYS MVGGFDFNRS KFNHVTQAWR QPGSSFKPFI YSAAVDKGFS PSTVINDAPL SIPTGDTGGQ VWEPKNYGGG YDGPMTMRRA LQKSKNLVSV RILRAIGTQY AQQYITRFGF DADRHPAYLP MALGAGSVTM LQMASGYSVF ANGGYRVNPY IIDRVVDARG TVVQQSHPMT AGKDAVRVID PRNDFIMDSL LRSVVSNGTG YQAKVKLGRN DMAGKTGTTN DSFDAWFCGY TPKLVGVAWM GYDNPRSLGD RETGGGLALP IWINYMSYAL KGEPQTERQP PEGVVQMAGD WAYEEYANGQ GVASVGLGDA MPGGSAPAGD QSQQPGINLA PTQEQEKQKI LDMFRGN
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