Gene Rpic12D_2820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2820 
Symbol 
ID8020491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2987600 
End bp2988514 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content63% 
IMG OID644831606 
ProductIntegrase catalytic region 
Protein accessionYP_002982762 
Protein GI241664402 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGAACT ACATCGACCG CCACCGTGAC GACTACGGGG TCGAGCCCAT CTGCCGGGTG 
CTGCAGATGG CCCCGTCGTG TTACTGGCGC CACGCAGCCC GGCTGCGTAA CCCGCAACTG
CGCAGTCAAC GCGCCCAGCG TGACGAGTGC TTGAAGGCGG ACATCCAGCG CGTGTGGCAT
GCCAACTGGC AGGTCTACGG GGCCGATAAG GTCTGGCTGC AGATGAACCG CGAGGGCATC
CCGGTGGCAC GTTGTACTGT GGAGCGACTG ATGCGTGCCA TGGGCTTGCA AGGGGCTCGC
CGTGGCAGGG CGGTACGTAC CACCACGCCT GACACATCAG CGCCGTGCCC GCTGGACCAC
GTCAACCGGC ACTTCAAGGC CAGCCGTCCC AACGAGCTAT GGGTGTCGGA CTTCACCTAT
GTCTCCACCT GGCAGGGCTG GCTGTATGTG GCCTTTGTTG TGGACGTGTA TGCCCGGCGC
ATCGTGGGCT GGCGAGTCAG CCGCAGCATG CAAACGGACT TCGTGCTGGA TGCGCTGGAG
CAGGCGCTGT ATGACCGCCA GCCAGCAGCC CATGCCTTGA CGCACCATTC CGACAGGGGC
AGTCAATACG TCAGCATCCG CTACACCGAA CGGCTGGACC AGGCGGGCAT ACAGCCCTCG
GTGGGCAGCC GGGGTGACAG CTACGACAAC GCGCTGGCCG AGACCATCAA CGGTCTGTAC
AAGGCCGAGC TGATTCACCG CCGGGGACCC TGGAAGACCA GGGAATCCGT GGAACTGGCC
ACCCTGCAAT GGGTGCACTG GTTCAACCAT GTCCGATTGC TCACGCCGAT TGGGGGCATC
CCTCCGGCAG AAGCTGAGGC AAACTACTGG AGGCAACTAG CCGTCAGCGA CACCTCGGCA
GAGGTGTCAA CTTAA
 
Protein sequence
MKNYIDRHRD DYGVEPICRV LQMAPSCYWR HAARLRNPQL RSQRAQRDEC LKADIQRVWH 
ANWQVYGADK VWLQMNREGI PVARCTVERL MRAMGLQGAR RGRAVRTTTP DTSAPCPLDH
VNRHFKASRP NELWVSDFTY VSTWQGWLYV AFVVDVYARR IVGWRVSRSM QTDFVLDALE
QALYDRQPAA HALTHHSDRG SQYVSIRYTE RLDQAGIQPS VGSRGDSYDN ALAETINGLY
KAELIHRRGP WKTRESVELA TLQWVHWFNH VRLLTPIGGI PPAEAEANYW RQLAVSDTSA
EVST