| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2549 |
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| Symbol | secD |
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| ID | 8020213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 2681843 |
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| End bp | 2683732 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644831329 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_002982492 |
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| Protein GI | 241664132 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.370381 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.188242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCT ATCCGCTCTG GAAATACATT GTGATCCTGG TGGCGCTTGC CATTGGGTTC
CTCTATACGC TGCCGAACTT CTTCGGTGAG GCGCCTGCCG TGCAGGTGTC TTCTGGCAAA
GCCACCGTCA AAGTCGACCT GAACGTGCAA AAGCAGGTCG AGAGCCTGCT GGCTGCGGCC
AGCATTCGAC CCGACGGCGT GTTCTTCGAC AACAACGGCA CCTCCGCCAG CGTGCGCGTG
CGTTTTGCCG ACACCGACAC GCAGCTCAAG GCCAAGGACA TCCTGGCCCG CGGCCTGAAC
ACCGATCAAG CCGATCCGAC CTACATCGTG GCGCTGAACC TGCTGCCCGG TTCGCCGCGC
TGGTTGAGCG GCGCGCCGTT CTTTGCCAAG CCCATGTTCC TGGGTCTCGA TTTGCGCGGT
GGCGTGCACT TCCTGCTGCA GGTCGACATG AACGGCGCCG TGACGAAGAA GCTCGACTCG
CTTGCCGGCG ACATCCGCAC GCAACTGCGT GACAAGGGCA TTCGACACAG CGGCATCGAT
CGCAACGGCA ACACCATCAC GATCAAGTTC AGCACCCCGG ACGACGCCGA CCGCGCCCGC
ACGCTGCTGG CCGACTCGAC CCGCGAACTG GCCTACACCG TGGACAAGAG CGCCGACAGC
GCCACCCTCA CCGGCACCTT CACCGCGGCT GCGATGAAGG AAGTGCAGGA CAACGCGGTG
AAGCAGAACA TCGTCACGCT GCACAACCGG GTCAACGAAC TCGGCGTGGC TGAACCGGTG
ATCCAGCAAC AGGGCCCGGA CCGCATCGTC GTGCAGCTGC CCGGCGTGCA GGACACCGCC
AAGGCCAAGG ACATCATCGG CCGCACGGCA ACGCTGGAAG CGCGCCTGGC CGATCCGAAC
GCGCCGCTCG TGCCGCGTGC CGGCGATCCG GTACCGCTGG GCGACGAGCT GTTCACGCAA
GGGCGCAGCG CTCCCGTCCT GCTGCAGAAG CAGGTGATCT TCACAGGCGA TCGCATCACC
AGCGCCTCGG CGGGCTTCGA CCAAAACCAC AATTCGTCGG TCGACATTAC GCTCGATGGC
CAGGGCGGCC GCATGCTGCG CGATGTCTCG CGTGACAACA TCGGCAAGCG CATGGGCATC
GTGCTCTTTG AAAAGGGCAA GGGCGAGGTG CTGACGGTGG CAACCATCCA GTCCGAACTG
GGTTCGCGCT TCCAGATCAC CGGCATGGGC TCGACGGAGG CGGCTTCCGA CCTGGCGCTG
CTGCTGCGCG CAGGCTCGCT GGCCGCGCCA ATGGAAATCA TCGAAGAACG CACCATCGGC
CCATCGCTGG GTGCCGATAA CATCAAGAAA GGCTTCGATT CGGCGCTGTA CGGCTTCCTC
GCCATCTCGG TGTTCATGGT GCTGTACTAC ATGCTGTTCG GCGCGTTCTC GGTGGCGGCC
CTGGGCGTCA ACGTGTTCCT GCTGATCGCA CTGCTCTCCA TGCTGCAGGC CACGCTCACG
CTGCCGGGTA TCGCGGCCAT CGCGCTGGCG CTGGGTATGG CCATTGACGC CAACGTGCTG
ATCAACGAGC GCGTGCGTGA AGAGCTGCGC GGCGGCGCAT CCGCGCAGAT GGCCATCGCC
GCCGGTTTCG ACCGCGCCTG GGCGACCATC CTCGATTCGA ACGTGACGAC GCTCATTGCC
GGCCTGGCGC TGATCGCCTT CGGTTCGGGC CCGGTACGTG GCTTCGCGAT CGTGCACTGC
CTGGGGATCG GCACGTCCAT GTTCTCGGCG GTGTTCTTCA ACCGCGGCCT CGTGAACCTC
TGGTACGGCC GCAAGAAGAA GCTGCAGAGC GTCGCCATCG GGCAGGTGTG GAAGCCGGGC
AATACGAACA CGGAATCGCC CGCCAAGTAA
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| Protein sequence | MNRYPLWKYI VILVALAIGF LYTLPNFFGE APAVQVSSGK ATVKVDLNVQ KQVESLLAAA
SIRPDGVFFD NNGTSASVRV RFADTDTQLK AKDILARGLN TDQADPTYIV ALNLLPGSPR
WLSGAPFFAK PMFLGLDLRG GVHFLLQVDM NGAVTKKLDS LAGDIRTQLR DKGIRHSGID
RNGNTITIKF STPDDADRAR TLLADSTREL AYTVDKSADS ATLTGTFTAA AMKEVQDNAV
KQNIVTLHNR VNELGVAEPV IQQQGPDRIV VQLPGVQDTA KAKDIIGRTA TLEARLADPN
APLVPRAGDP VPLGDELFTQ GRSAPVLLQK QVIFTGDRIT SASAGFDQNH NSSVDITLDG
QGGRMLRDVS RDNIGKRMGI VLFEKGKGEV LTVATIQSEL GSRFQITGMG STEAASDLAL
LLRAGSLAAP MEIIEERTIG PSLGADNIKK GFDSALYGFL AISVFMVLYY MLFGAFSVAA
LGVNVFLLIA LLSMLQATLT LPGIAAIALA LGMAIDANVL INERVREELR GGASAQMAIA
AGFDRAWATI LDSNVTTLIA GLALIAFGSG PVRGFAIVHC LGIGTSMFSA VFFNRGLVNL
WYGRKKKLQS VAIGQVWKPG NTNTESPAK
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