Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2476 |
Symbol | |
ID | 8020140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 2593619 |
End bp | 2594332 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644831257 |
Product | transcriptional regulator, histidine utilization repressor, GntR family |
Protein accession | YP_002982420 |
Protein GI | 241664060 |
COG category | [K] Transcription |
COG ID | [COG2188] Transcriptional regulators |
TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00699876 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACACG ACCCGTCCGC CAGCACGCCC GCCTTCCAGC GCATCAAGGA AGACATCCTC ACGCGCATTC GCAGCGGGGA GTGGCAGGAA GGGGAAATGA TTCCGGGGGA GACGACGCTC GCGCAGACCT TTGGCGTGTC GCGCATGACG GTCAATCGCG CGCTGCGTGA GTTGACCGCC GAGCAGATCC TCACGCGCGT GCAGGGGCTG GGAACGTTCG TCGCGCAGCA GAAGTACCAG GCGACGCTGG TGGCGATCCG CAACATCGCC GAGGAAATTG CAGCGCGCGG TCATCAGCAT CGCGCCGAAC TGCACAAGTT GGAGCGTGCC CGCGCCAACG AGGCAATGGC GGCTTCGTTT GGCGTGCCAG CAGGCCGCGT ACTCTTCCAT TCACTGATCG TGCATTTTGA AAACGACCTG CCGATCCAGG TAGAAGACCG TTGGGTCAAC GCGGCGTTGG CGCCCGAATA CATGGAGCAG GATTTCACGC AGACCACGCC CAACGCCTAC CTGATGCGTG CCGCCCCGTT GCAGGGCGTG GATTACGGCA TCGAGGCGCG CCTGCCGCCG CGCGAGATTG CGGAGATGCT GCACATGGAC GTGCGCGAGC CCTGCCTGAT GCTGCGGCGG AAAACGCTGT CGCAGGGCCA GGTCGCCTCG GTGGCGACCA TGTGGCATCC CGGCGGGCGT TATCAGTTCA CGGGCAGCTT CTGA
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Protein sequence | MSHDPSASTP AFQRIKEDIL TRIRSGEWQE GEMIPGETTL AQTFGVSRMT VNRALRELTA EQILTRVQGL GTFVAQQKYQ ATLVAIRNIA EEIAARGHQH RAELHKLERA RANEAMAASF GVPAGRVLFH SLIVHFENDL PIQVEDRWVN AALAPEYMEQ DFTQTTPNAY LMRAAPLQGV DYGIEARLPP REIAEMLHMD VREPCLMLRR KTLSQGQVAS VATMWHPGGR YQFTGSF
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