Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2415 |
Symbol | xerD |
ID | 8020079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 2534891 |
End bp | 2535787 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644831196 |
Product | site-specific tyrosine recombinase XerD |
Protein accession | YP_002982359 |
Protein GI | 241663999 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCCGC GGAGCGCAGA CGCCATCCAG CGCTTCTGCG ACGCACTGTG GCTGGAGGAC GGCCTCGCCC GCAATACGCT GGATGCGTAC CGGCGCGACT TGACGCTCTA CGCGCACTGG CTGGCCGCGC GCGGCAAGTC CATCGCCGAA ACCGAAGACG GCGACCTGGC CGATTACTTC GCCGCACGCC ATGCCGAGAG CCGTGCATCG TCGGCCAACC GGCGCCGCAC CGTCTTCAAG CGCTTCTTCC AGTGGGCGCT GCGGGAGCAC GTGGTGAGCA CCGATCCGTC GCGCCTGCTG CCGACGGCCA AGCAGCCGCC CCGCTTTCCG AAGACGCTGT CCGAAACCCA AGTCGAGGCG CTCATCAACG CGCCGGATGT CGACACGCCG CTCGGCCTGC GCGACCGCGC GATGATCGAG CTGATGTATG CGAGCGGGCT GCGCGTGTCG GAAATCGTCG CGCTGAAAAC GGTGGAAGTG GGCCTGAACG AAGGCGTGGT GCGTGTGGTC GGCGGCAAGG GCGGCAAGGA CCGCCTGGTA CCGTTCGGCG CCGAAGCGGG CGACTGGCTG CGGCGTTATT TACGCGATGG CCGCACGGCG CTGCTGGGTG AACGTACGGC TGACGCGCTG TTCGTGACGG CACGTGGCGA AGGCATGACG CGCCAGGCGT TCTGGTACCT CATCAAACGC TATGCGCTGC TCGCCGATAT CCACGCCCCG TTGTCTCCGC ATACGTTGCG GCACGCGTTT GCCACGCACC TGCTAAACCA CGGCGCAGAC TTGCGCGTCG TGCAGATGCT GCTCGGCCAC GCGGATATTT CCACCACGCA GATCTACACC CACGTCGCAC GCGAGCGGCT GCGCACACTC CATGCGCAGC ACCATCCACG CGGATAG
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Protein sequence | MPPRSADAIQ RFCDALWLED GLARNTLDAY RRDLTLYAHW LAARGKSIAE TEDGDLADYF AARHAESRAS SANRRRTVFK RFFQWALREH VVSTDPSRLL PTAKQPPRFP KTLSETQVEA LINAPDVDTP LGLRDRAMIE LMYASGLRVS EIVALKTVEV GLNEGVVRVV GGKGGKDRLV PFGAEAGDWL RRYLRDGRTA LLGERTADAL FVTARGEGMT RQAFWYLIKR YALLADIHAP LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH ADISTTQIYT HVARERLRTL HAQHHPRG
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