| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2338 |
|---|
| Symbol | lspA |
|---|
| ID | 8020002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2462107 |
|---|
| End bp | 2462631 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644831121 |
|---|
| Product | lipoprotein signal peptidase |
|---|
| Protein accession | YP_002982284 |
|---|
| Protein GI | 241663924 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0597] Lipoprotein signal peptidase |
|---|
| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.18883 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACTC GGAACAACGG CAAGAGCAAA TCGATCGGGA TGAAGAAGAG CAGCGGCGGT
CATGGCGTGG GCCCCTGGCT GGGCCTGGCC GTCATCTGGA TCCTGCTGGA CCAATTGACC
AAGATCGCCG TCCTCAAAAC CTTCACTTAC GGCGAGTCAC GGCCGATCAC CGGCTTCTTC
AACCTGGTGC TCGCCTATAA CAAGGGAGCG GCGTTTTCGT TCCTGGCCGC GGCGGGCGGC
TGGCAGCGCT GGTTCTTCAC GGGGCTGGGC GTGGCGGCGG CGCTGTTCAT CGTGTGGCTG
CTCAAGCGGC ACAGCGGGCA GAAGATGTTC TGCTTCGCGC TGGCGCTGAT TCTGGGCGGC
GCGCTGGGCA ACGTGATCGA CCGCGTCATC TACGGCCACG TGGTCGACTT TCTCGACTTC
TACCTGCACA ACTACCACTG GCCGGCCTTC AACGTGGCGG ATTGCGGTAT CACCATCGGC
GCGGTCCTGT TGATCGTCGA CGAACTGCGG CGCGTTCGTC GCTAA
|
|---|
| Protein sequence | MATRNNGKSK SIGMKKSSGG HGVGPWLGLA VIWILLDQLT KIAVLKTFTY GESRPITGFF
NLVLAYNKGA AFSFLAAAGG WQRWFFTGLG VAAALFIVWL LKRHSGQKMF CFALALILGG
ALGNVIDRVI YGHVVDFLDF YLHNYHWPAF NVADCGITIG AVLLIVDELR RVRR
|
|---|
| |