| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2027 |
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| Symbol | |
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| ID | 8019688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 2156253 |
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| End bp | 2158718 |
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| Gene Length | 2466 bp |
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| Protein Length | 821 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644830813 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002981978 |
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| Protein GI | 241663618 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGGCCA CTGCGCCGGC AAAGACGGGG AAAACCCAGC CGCGCCAGAC CGCCGATATC
GCCGTCGCCG CCAAGACTGT CAAACCGACA GCGCGCACAA AGGGCGCGAT CCAATCTTCA
ACCTCAGGCA AGGTCTCGAC GTCGATGAGC ACGAGCGCCA GACCTGGCGG CACAGCCGCT
TCCGTCGCAC TCAAGGGCAA GACAACCACC GTGGCGAAAT CGAAAGTTAC CGAAGTCGAG
AGCAAGCAGA CCCCTGCCAG CGCAAGCGCA ACCAAGACGG GTACCGCTCG TACCAACACC
GCAGCCAAGC CAGCCAAGGC GGCCGCGGAG GACACCAAGC GCACCGCCCA GGCAGAGGCC
ACCCCCACAA CTCCTCCCGC GCCCCGCGCC GAAGCAGCAG CCGAGCCCAA GAAGCGCGGC
CGCAAGCCCA AGGCAGAGAC GCAGGCAGAC GACAGCAGCA CGGACGTGAC TGAAGAATTT
GACACCCCCG CCGCTCCGGC ACCGAAAACC GAAAAGCTGA AGGCCCGTGA CCGCAAGGCC
AAGGAAAAAG CCCTGCTCAA GGAATTCGCT GCCTCGCAGC AAGGCGGTTC GGAAGAAGAG
CTTGAGGCCC GCCGCCAGAA GCTCAAGGCG CTGATCAAGC TGGGCAAATC GCGCGGCTAC
CTGACCTACG CCGAAATCAA CGACCACCTC CCCGACGACA TGGTCGATGT GGAGTCGCTG
GAAACGTTGG TTGCCACGCT CAACGACATC GGCGTTGCCG TGTACGAGCA GGCGCCGGAC
GCCGAAACGC TGCTCCTGAA CGACAACGCA CCTTCCGTGA CCACGGAAGA GGAAGCTGAA
GAAGAAGCTG AAGCCGCGCT GTCGACGGTT GACTCCGAAT TCGGCCGCAC GACCGACCCG
GTGCGCATGT ACATGCGCGA AATGGGCACG GTTGAGCTGC TGACGCGCGA AGGCGAAATC
GTGATCGCCA AGCGCATCGA AGCCGGCCTG AAGGACATGG TCATGGCCAT TTCGGCCTGC
CCGGTCACCA TCTCCGAAAT CCTCGCCATG GGCGAGCGCG TGGCCAACGA CGAAGCCAAG
ATCGACGAGT ACATCGATGG CTTGATCGAC CCGAACGCCG AAGCCGATGC AGCCGCTGCT
GCTGAGGAAG AGGAGGAATT CGAGGAAGAG GAAGCCGAAG AAGAAGGCGA CGAAGAGGAA
GACGAGGACG ATGAAGGTGC CGGCGCTGCC GCCGCTTCGG CCCGTCAACT CGAAGAGCTC
AAGCAGGCCG CGCTGGTCAA GTTTGGTGTG ATCGGCGAGC AGTTTGACAA GATGCGCCGT
GCGTTCGAGA AGGAAGGCTA CAAGTCCAAG CCTTACGTGA AGGCACAGGA AGCCATCCAG
GCCGAGCTGA TGACGATCCG CTTCACGGCG CGCAACGTCG AGCGCCTGTG CGACACGCTG
CGCGGCCAGG TGGACGAAGT GCGCAAGCTC GAACGCGCCA TCCTGAACAT CGTGGTGGAC
AAGTGCGGCA TGCCGCGCAG CGACTTCGTT GCGCGCTTCC CGGGCAACGA GACCAACCTG
AAGTGGATCG AGACCGTGGT GGCCGACGGT AAGCCGTACA GCACCATCGT CGAGCGCAAC
GTGCCGGCTG TGCACGAACT GCAGCAAAAG CTGATCGACC TGCAGGCGCG CGTGGTGCTG
CCGCTGGCCG AGTTGAAGGA CGTCAACCGC AAGATGTCGG AAGGCGAGCG CCGCGCTCGC
GAGGCCAAGC GTGAGATGAC CGAGGCCAAC CTGCGGCTGG TGATCTCGAT CGCCAAAAAG
TACACCAACC GCGGTCTGCA GTTCCTCGAC CTGATCCAGG AAGGCAACAT CGGCCTGATG
AAGGCGGTGG ACAAGTTCGA ATACCGTCGC GGCTACAAGT TCTCGACGTA CGCCACGTGG
TGGATCCGTC AGGCGATCAC GCGTTCGATC GCCGACCAGG CGCGCACCAT CCGTATTCCG
GTGCACATGA TCGAGACGAT CAACAAGATG AACCGCATCT CGCGTCAGAT CCTGCAGGAA
ACCGGCAATG AACCGGATCC GGCAACGCTG GCCGAGAAGA TGGAGATGCC GGAAGACAAG
ATCCGCAAGA TCATGAAGAT CGCGAAGGAG CCGATCTCCA TGGAAACGCC GATCGGTGAC
GACGACGATT CCCATCTGGG CGATTTCATC GAGGACACGA ACACGCTGGC CCCGGCCGAA
GCGGCGCTGC ATGGTTCCAT GCGCGGCGTG GTGAAGGACG TGCTCGATTC GCTGACGCCG
CGCGAAGCCA AGGTGCTGCG CATGCGTTTC GGTATCGAAA TGAGCACTGA CCACACGCTG
GAAGAAGTCG GCAAGCAGTT CGACGTGACC CGCGAGCGTA TCCGTCAGAT CGAAGCGAAG
GCACTGCGCA AGCTGCGCCA TCCGAGCCGC TCCGACAAGC TGAAGAGCTT CCTAGAGGGA
AGCTGA
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| Protein sequence | MKATAPAKTG KTQPRQTADI AVAAKTVKPT ARTKGAIQSS TSGKVSTSMS TSARPGGTAA
SVALKGKTTT VAKSKVTEVE SKQTPASASA TKTGTARTNT AAKPAKAAAE DTKRTAQAEA
TPTTPPAPRA EAAAEPKKRG RKPKAETQAD DSSTDVTEEF DTPAAPAPKT EKLKARDRKA
KEKALLKEFA ASQQGGSEEE LEARRQKLKA LIKLGKSRGY LTYAEINDHL PDDMVDVESL
ETLVATLNDI GVAVYEQAPD AETLLLNDNA PSVTTEEEAE EEAEAALSTV DSEFGRTTDP
VRMYMREMGT VELLTREGEI VIAKRIEAGL KDMVMAISAC PVTISEILAM GERVANDEAK
IDEYIDGLID PNAEADAAAA AEEEEEFEEE EAEEEGDEEE DEDDEGAGAA AASARQLEEL
KQAALVKFGV IGEQFDKMRR AFEKEGYKSK PYVKAQEAIQ AELMTIRFTA RNVERLCDTL
RGQVDEVRKL ERAILNIVVD KCGMPRSDFV ARFPGNETNL KWIETVVADG KPYSTIVERN
VPAVHELQQK LIDLQARVVL PLAELKDVNR KMSEGERRAR EAKREMTEAN LRLVISIAKK
YTNRGLQFLD LIQEGNIGLM KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP
VHMIETINKM NRISRQILQE TGNEPDPATL AEKMEMPEDK IRKIMKIAKE PISMETPIGD
DDDSHLGDFI EDTNTLAPAE AALHGSMRGV VKDVLDSLTP REAKVLRMRF GIEMSTDHTL
EEVGKQFDVT RERIRQIEAK ALRKLRHPSR SDKLKSFLEG S
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