| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1975 |
|---|
| Symbol | |
|---|
| ID | 8019635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2098516 |
|---|
| End bp | 2099700 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644830761 |
|---|
| Product | drug resistance transporter, Bcr/CflA subfamily |
|---|
| Protein accession | YP_002981927 |
|---|
| Protein GI | 241663567 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGCC CGATTCCCGG CTGGCTCCTG CTGCTTGGCG CGCTCACGGC CATCGGCCCG
CTGTCGGTCG ACATGTACCT GCCCAGCCTG CCGACCATCG CGCGCGACCT GAATACATCG
TCGGCTGCGG CGGGGCTAAC GCTGACCGTT TTCCTGATCA GCCTGGCGAT CGGCCAGCTG
ATCTACGGCC CCGCCAGCGA TCGCTTCGGC CGCAAACCGC CGCTCTACAT CGGCCTGGCG
ATGTACGTCG CAGCCTCCAT CGGCTGCGCT TTCGCCAAGG ACGCCACGAT GCTCGCCGTG
CTGCGCGGCG TGCAGGGGTT TGGCGGCTGC GCGGGCATGG TCATCGCGCG TGCAGCCGTG
CGCGATCGCA TGGACCCGGC CGGCGCCGCA CAAGCGTATT CGACGCTGAT GCTGGTCATG
GGGGTGGCGC CCATCCTGGC GCCGATGATT GGCGGCGCAG TGCTGCAGTT CACAACGTGG
CGGGTCATCT TTGCCTTGCT GACGGCATTT GGCGTGCTGT CGCTGGTGGC CGTGCACTAC
CTGATGCGCG AGTCGCTCGC GCCCGAGCAG GCGCGCAAGC TGGCAGTGGG CCACGTGCTG
CGCGACTACT GGGAACTCCT GCGCGATCAC CATTACGCCG CCTATATGGG GTGCGGCGCG
GTGTTTCTGT CGGGCATGTT TGCGTACATC ACCGTGTCGT CGTTCGTGCT GATCGACGGT
TATGGGCTGA CGCCGTCGCA GTACGCCTGG GTGTTCGGCA GCAACGCGGC CGGGATGATC
GCCGCCTCGC GCGTGAATGT GCGACTGGTG CGCAAGTACT CGCCGGCGCG CGTGCTGCGG
CGGGCGCTGT GGGTGCCGGC CATCACCAGC GTGCTGGCCG CCGCCGCCGC CGCGGCTGGC
TTTACGCCGC TGCCGCTCGT GCTGGCGGCG CTGTTCTGCT ACATCGCGTC GATCGGCTGC
ATCTCGCCCA ACACCGGCGC GCTGGCAATG GCGGGGCAGG GCGCGCGTGC GGGTACGGGC
TCGGCGCTCA TGGGCGCCAT GCAGTTTGGC CTCGGCATGG TGACCGGCAC GGTGGTCGCC
ACCATCGGCC AGACCGCGCT GCCTCTGCTG GGCATGATGG CTGTGTGTGC CATCGTCGCG
CTCCTTCTGG GTCTGCGCAT CACGCGCGAA GAGCCCGCCG CCTGA
|
|---|
| Protein sequence | MPGPIPGWLL LLGALTAIGP LSVDMYLPSL PTIARDLNTS SAAAGLTLTV FLISLAIGQL
IYGPASDRFG RKPPLYIGLA MYVAASIGCA FAKDATMLAV LRGVQGFGGC AGMVIARAAV
RDRMDPAGAA QAYSTLMLVM GVAPILAPMI GGAVLQFTTW RVIFALLTAF GVLSLVAVHY
LMRESLAPEQ ARKLAVGHVL RDYWELLRDH HYAAYMGCGA VFLSGMFAYI TVSSFVLIDG
YGLTPSQYAW VFGSNAAGMI AASRVNVRLV RKYSPARVLR RALWVPAITS VLAAAAAAAG
FTPLPLVLAA LFCYIASIGC ISPNTGALAM AGQGARAGTG SALMGAMQFG LGMVTGTVVA
TIGQTALPLL GMMAVCAIVA LLLGLRITRE EPAA
|
|---|
| |