Gene Rpic12D_1945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1945 
Symbol 
ID8019603 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2072123 
End bp2073157 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content67% 
IMG OID644830730 
Productesterase, PHB depolymerase family 
Protein accessionYP_002981898 
Protein GI241663538 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3509] Poly(3-hydroxybutyrate) depolymerase 
TIGRFAM ID[TIGR01840] esterase, PHB depolymerase family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.198099 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0353299 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCCG TCACCCGCCT GGTCGACGCC CTGACCACAC CGGGCTTTGG CCGCCAGTCA 
TGGCCGCCTA AACCGGTTAA GCCGCTCAAG CCAACCACAC GCGGCGAGAG CCCGCGCCGC
GTACGCCCCA CGCCCACCCA GGGCACCTTC GTCCGCGAAC AGTTCATCTA CGAACCCGAG
TCGCCCGCCG TGGTGGCGCG CCGGCCGGAA TACTGCCTCT ACACACCGCC CACACGCGGC
AGCAAGCTCC CGGCACTGAT GGTGATGCTG CATGGCTGCA AGCAGTCGGC CGAAGTCCTG
GCGCATGGCA CGCGCATGAA CGCGCTGGCC GACCGTGAAG GCTTTATCGT GCTGTATCCG
GAGCAGCCGC GCCGCGCGCA TCCGCAATGC TGCTGGCACT GGTATGACCC GGAGCATGCT
GGCGCGCGCG AGGCCGACGG CATTGCCCAA CTGATCGAAC AAACCCTGGC ACAAACTGGC
GCAGACCCCT CGCGCGTATA TCTGGCAGGG TTGTCGGCCG GCGCGGGATT GGCCGGCCTG
ATGGCATTGC GTCATCCGAA GTTGTTTGCC GCGTTGGCGC TACATTCGGG CCCGGCCTTG
GGCGTGGCAC GCTCGCCGGC GTCTGCATTG AACCTGATGC GCCGCGGGGC ACGCGTCGAC
GCCGTCGATG CACTCTCCAG CGTGGTAAAT GTAGCCGCCT ATCCCGGCAT GCCAACGATG
CTGTTGCACG GTCTGCGCGA TGAGGCCGTC AACCCCACCA ACCAAGCGCA GTTAGCCGCG
CAGTTCCGCG CGCTGAATCA TCTGGGCGAT GGGCGCAACG TCTCACGCGA AACCACGCGC
GGCGAGGGCT ATGTCCTGCG CAACGACATA CGCGACGGCG AATGCATCGT CAGCCTGTGC
CAACTCACCG CCACGGGCCA CGCCTGGAGC GGCGGCGACC CGCGCTACGC CTTCCACACG
CCGGGCCCGG ACGCGACCTG GCTGTGGTGG CAATTCGCAC GCCGGCACAT TCGCGATACA
GCGCTCGCGG CGTAA
 
Protein sequence
MKSVTRLVDA LTTPGFGRQS WPPKPVKPLK PTTRGESPRR VRPTPTQGTF VREQFIYEPE 
SPAVVARRPE YCLYTPPTRG SKLPALMVML HGCKQSAEVL AHGTRMNALA DREGFIVLYP
EQPRRAHPQC CWHWYDPEHA GAREADGIAQ LIEQTLAQTG ADPSRVYLAG LSAGAGLAGL
MALRHPKLFA ALALHSGPAL GVARSPASAL NLMRRGARVD AVDALSSVVN VAAYPGMPTM
LLHGLRDEAV NPTNQAQLAA QFRALNHLGD GRNVSRETTR GEGYVLRNDI RDGECIVSLC
QLTATGHAWS GGDPRYAFHT PGPDATWLWW QFARRHIRDT ALAA