Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1870 |
Symbol | |
ID | 8019526 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1987316 |
End bp | 1988572 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644830653 |
Product | urea ABC transporter, urea binding protein |
Protein accession | YP_002981823 |
Protein GI | 241663463 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.510403 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.303887 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGTC GTGAGCTGTT GAAGCTGTCT GCCGTCGCCG CCGCAACGCT GTTGTCCGTG TCGAGCCCCG CGTTTGCTCA GGCAAAAGAA CCGATCAAGG TCGGCGTCCT GCATTCGCTG TCGGGAACGA TGGCCATCTC CGAGACGTCG CTGAAAGACG TTGCGCTGAT GACGATCGAC GAGATCAACA AGAGTGGTGG CGTGCTGGGC CGCAAGCTGG AGCCGGTGGT GGTGGACCCG GCATCGAACT GGCCGCTGTT TGCCGAGAAG GCGCGTGGGC TGCTGACGCA GGACAAGGTG GCTGTGACGT TCGGCTGCTG GACGTCGGTG TCGCGCAAGT CCGTGCTGCC GGTCTATGAG GAGCTGAACG GCCTGCTGTT CTACCCGGTG CAGTACGAAG GCGAAGAGAT GTCGAAGAAC GTCTTCTACA CCGGCGCGGC ACCCAACCAG CAGGCCATTC CGGCTGTGGA ATACCTGATG AGCAAGGAAG GCGGCGGCGC CAAGCGCTTC TTCCTGCTCG GTACCGATTA CGTCTACCCG CGCACGACCA ACAAGATCCT GCGTGCCTTC CTGCACGGCA AGGGCGTGAA GGACAGCGAC ATCGAAGAGG TCTATACGCC GTTCGGCCAC TCCGACTATC AGACCATCGT TGCCAACATC AAGAAGTTCG CGCAGGGCGG CAAGACGGCC GTGGTGTCGA CCATCAACGG CGACTCCAAC GTGCCGTTCT ACAAGGAACT CGGCAACGCC GGCCTGAAGG CCAAGGACGT GCCGGTGGTG GCCTTCTCGG TGGGTGAAGA AGAACTGCGC GGCATCGACA CCAAGCCCCT GGTAGGCCAT CTGGCCGCAT GGAACTACTT CATGTCGGTC AAGAACCCGG TTAACGACGA CTTCAAGAAG AAGTGGGCTG CATGGGTCAA GGCCAATAAC CTGCCGGGCG GCGACAAGCG CGTCACCAAC GACCCGATGG AAGCCACCTA CGTCGGCATC ATGATGTGGA AGCAGGCTGT CGAGAAAGCT GGTTCGACCG ACGTGGACAA GGTCCGCAAG GCGATGTACG GCCAGCAGTT CAAGGCACCG TCGGGCTTTA CGCTGGTGAT GAACAACAAC CATCACCTCA GCAAGCCCGT GATGATCGGC GAGGTGCGTG GCGATGGTCA GTTCAACGTC GTGTGGAAGA CGCCGACGGT GATCCGCGCC AAGCCGTGGA GCCCGTACAT CCCGGGCAAC GAGGGCAAGC CTGACGAAGT GAAGTAA
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Protein sequence | MKRRELLKLS AVAAATLLSV SSPAFAQAKE PIKVGVLHSL SGTMAISETS LKDVALMTID EINKSGGVLG RKLEPVVVDP ASNWPLFAEK ARGLLTQDKV AVTFGCWTSV SRKSVLPVYE ELNGLLFYPV QYEGEEMSKN VFYTGAAPNQ QAIPAVEYLM SKEGGGAKRF FLLGTDYVYP RTTNKILRAF LHGKGVKDSD IEEVYTPFGH SDYQTIVANI KKFAQGGKTA VVSTINGDSN VPFYKELGNA GLKAKDVPVV AFSVGEEELR GIDTKPLVGH LAAWNYFMSV KNPVNDDFKK KWAAWVKANN LPGGDKRVTN DPMEATYVGI MMWKQAVEKA GSTDVDKVRK AMYGQQFKAP SGFTLVMNNN HHLSKPVMIG EVRGDGQFNV VWKTPTVIRA KPWSPYIPGN EGKPDEVK
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