Gene Rpic12D_1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1870 
Symbol 
ID8019526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1987316 
End bp1988572 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content61% 
IMG OID644830653 
Producturea ABC transporter, urea binding protein 
Protein accessionYP_002981823 
Protein GI241663463 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID[TIGR03407] urea ABC transporter, urea binding protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.510403 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.303887 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGTC GTGAGCTGTT GAAGCTGTCT GCCGTCGCCG CCGCAACGCT GTTGTCCGTG 
TCGAGCCCCG CGTTTGCTCA GGCAAAAGAA CCGATCAAGG TCGGCGTCCT GCATTCGCTG
TCGGGAACGA TGGCCATCTC CGAGACGTCG CTGAAAGACG TTGCGCTGAT GACGATCGAC
GAGATCAACA AGAGTGGTGG CGTGCTGGGC CGCAAGCTGG AGCCGGTGGT GGTGGACCCG
GCATCGAACT GGCCGCTGTT TGCCGAGAAG GCGCGTGGGC TGCTGACGCA GGACAAGGTG
GCTGTGACGT TCGGCTGCTG GACGTCGGTG TCGCGCAAGT CCGTGCTGCC GGTCTATGAG
GAGCTGAACG GCCTGCTGTT CTACCCGGTG CAGTACGAAG GCGAAGAGAT GTCGAAGAAC
GTCTTCTACA CCGGCGCGGC ACCCAACCAG CAGGCCATTC CGGCTGTGGA ATACCTGATG
AGCAAGGAAG GCGGCGGCGC CAAGCGCTTC TTCCTGCTCG GTACCGATTA CGTCTACCCG
CGCACGACCA ACAAGATCCT GCGTGCCTTC CTGCACGGCA AGGGCGTGAA GGACAGCGAC
ATCGAAGAGG TCTATACGCC GTTCGGCCAC TCCGACTATC AGACCATCGT TGCCAACATC
AAGAAGTTCG CGCAGGGCGG CAAGACGGCC GTGGTGTCGA CCATCAACGG CGACTCCAAC
GTGCCGTTCT ACAAGGAACT CGGCAACGCC GGCCTGAAGG CCAAGGACGT GCCGGTGGTG
GCCTTCTCGG TGGGTGAAGA AGAACTGCGC GGCATCGACA CCAAGCCCCT GGTAGGCCAT
CTGGCCGCAT GGAACTACTT CATGTCGGTC AAGAACCCGG TTAACGACGA CTTCAAGAAG
AAGTGGGCTG CATGGGTCAA GGCCAATAAC CTGCCGGGCG GCGACAAGCG CGTCACCAAC
GACCCGATGG AAGCCACCTA CGTCGGCATC ATGATGTGGA AGCAGGCTGT CGAGAAAGCT
GGTTCGACCG ACGTGGACAA GGTCCGCAAG GCGATGTACG GCCAGCAGTT CAAGGCACCG
TCGGGCTTTA CGCTGGTGAT GAACAACAAC CATCACCTCA GCAAGCCCGT GATGATCGGC
GAGGTGCGTG GCGATGGTCA GTTCAACGTC GTGTGGAAGA CGCCGACGGT GATCCGCGCC
AAGCCGTGGA GCCCGTACAT CCCGGGCAAC GAGGGCAAGC CTGACGAAGT GAAGTAA
 
Protein sequence
MKRRELLKLS AVAAATLLSV SSPAFAQAKE PIKVGVLHSL SGTMAISETS LKDVALMTID 
EINKSGGVLG RKLEPVVVDP ASNWPLFAEK ARGLLTQDKV AVTFGCWTSV SRKSVLPVYE
ELNGLLFYPV QYEGEEMSKN VFYTGAAPNQ QAIPAVEYLM SKEGGGAKRF FLLGTDYVYP
RTTNKILRAF LHGKGVKDSD IEEVYTPFGH SDYQTIVANI KKFAQGGKTA VVSTINGDSN
VPFYKELGNA GLKAKDVPVV AFSVGEEELR GIDTKPLVGH LAAWNYFMSV KNPVNDDFKK
KWAAWVKANN LPGGDKRVTN DPMEATYVGI MMWKQAVEKA GSTDVDKVRK AMYGQQFKAP
SGFTLVMNNN HHLSKPVMIG EVRGDGQFNV VWKTPTVIRA KPWSPYIPGN EGKPDEVK