Gene Rpic12D_1729 details

Gene Information

• Locus tag: Rpic12D_1729
• Symbol: prpE
• ID: 8019383
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia pickettii 12D
• Kingdom: Bacteria
• Replicon accession: NC_012856
• Strand: -
• Start bp: 1840662
• End bp: 1842563
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644830512
• Product: propionyl-CoA synthetase
• Protein accession: YP_002981684
• Protein GI: 241663324
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
• TIGRFAM ID: [TIGR02188] acetate--CoA ligase; [TIGR02316] propionate--CoA ligase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.264678
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.844585
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCCATGT CCGCCGCGTA CCGTGCGCTG TATCAGCGCT CCATTGATGA CCCCACTGGC 
TTCTGGGGCG AACAGGCCCA GCGCATCGAA TGGCAGACGC CATATTCTGC CGTCCTGGAC 
GATTCGCGCT TGCCGTTCGC CAAGTGGTTC GTGGGCGGCC GCACCAACCT GTGCCACAAC 
GCCGTCGACC GGCATCTCGG CACGCGCGGT GAGCAAGGGG CGCTGGTGTA CGTTTCCACC 
GAAACCGGCC TGGAGATCAC GTACACGTAT CGCCAGCTCC ATCGCGAGGT CAACCGCATG 
GCGGCGAGCC TGCAGGCGCT GGGCGTCAGA CGGGGCGACC GCGTGCTGAT TTACCTGCCG 
ATGATTCCGG AAGCCGCGTT CGCCATGCTG GCCTGTGCAC GCATCGGCGC GATCCATTCG 
GTCGTGTTCG GCGGCTTTGC CTCCAACAGT CTCGCCACGC GCATCGATGA CGCCACGCCG 
CGCGTGATCG TCAGTGCGGA TGCAGGCTCG CGCGCGGGCA AGGTGGTCGA GTACAAGCCA 
TTGCTCGATG CCGCGATTGA CCTTGCGGCG CACAAGCCCG AGCGCGTGCT GCTCGTCAAT 
CGCCAACTCG CGCCCATGCA GCGCAACCCG CGCGATGTCG ACTACGCAAC GCTCGCCGCC 
CAGCACGCGA ACGCCGAGGT GCCGTGCGAA TGGATGGAAT CGAGCGAGCC CTCGTACATC 
CTCTACACCT CCGGCACCAC CGGCAAACCC AAAGGCGTGC AGCGTGATAC CGGCGGCTAT 
GCGGTGGCGC TCGCGGCGTC GATGCCGCTC ATTTTCGGTA CGCAGCCCGG CGACACGATG 
TTCACTGCAT CGGACGTGGG CTGGGTCGTG GGCCACAGCT ACATCGTCTA CGCGCCGCTG 
CTCGCGGGCC TGACGACGGT CATGTACGAA GGCACGCCAA TTCGCCCGGA CGGGGCGGTC 
TGGTGGCGCA TCGTCGAGCA ATACCGCGTG AACGTGATGT TCACCGCGCC GACCGCCATT 
CGCGTACTCA AAAAGCAGGA TCCGGCGCTG CTGCAGCGAC ATGATCTGTC GAGCCTGCGC 
CGCCTCTTCC TTGCCGGCGA GCCGCTGGAC GAGCCCACCG CAAGCTGGAT CGGCGAGGCA 
CTGCACAAGC CCATCGTTGA CAACTACTGG CAGACCGAGA CCGGCTGGCC GATGCTGGCC 
ATTCCGCAAG GGGTTGAGCC TTCCGAGCAA AAGCTTGGCT CGCCGGGCTT CCCGGTCTAC 
GGGTACAAGC TCGACATCCT GGATGAGGCC ACCGGGCAAC CTTGCGCCCC TGGAGAGAAA 
GGCCTGCTCG CGGTGTCCGC GCCGCTGCCG CCGGGCTGCA TGACCACCGT CTGGGGCGAC 
GATGCCCGCT TTCTGAAGAC CTACTGGTCT GCGTTCCCGG GGCGACACAT CTATTCGAGC 
TTCGACTGGG GCGTGCGCGA CGAGGAGGGT TACGTGACCA TCCTCGGCCG CACCGACGAC 
GTCATCAACG TGGCGGGCCA CCGTCTGGGC ACCCGCGAGA TCGAAGAAAG CCTGTCGTCG 
CATCCCGCCA TCGCCGAGGT GGCGGTGGTG GGCGTGGCCG ATCAGCTCAA AGGGCAGGTG 
GCGATGGGGT TTGCCATCGT GCGTGACGCT TCGCGCATTG CCGAGCCGAC GGGGCGCCTG 
GCCCTCGAAG GTGAGTTGAT GCGCACAGTC GAGATGCAGC TCGGGGCAGT GGCACGGCCC 
TCGCGCGTGT TCTTTGTCGG GGCGCTGCCC AAGACGCGCT CCGGAAAGCT GCTGCGCCGG 
GCGATGCAGG CCGTAGCGGA AGGGCGTGAC CCGGGAGATC TGACGACCAT TGAAGACCCC 
ACGGCGCTGG CTCAGGTGCA GGCTGCCGTG CGAGGTGACT AG 

 

Protein sequence

MPMSAAYRAL YQRSIDDPTG FWGEQAQRIE WQTPYSAVLD DSRLPFAKWF VGGRTNLCHN 
AVDRHLGTRG EQGALVYVST ETGLEITYTY RQLHREVNRM AASLQALGVR RGDRVLIYLP 
MIPEAAFAML ACARIGAIHS VVFGGFASNS LATRIDDATP RVIVSADAGS RAGKVVEYKP 
LLDAAIDLAA HKPERVLLVN RQLAPMQRNP RDVDYATLAA QHANAEVPCE WMESSEPSYI 
LYTSGTTGKP KGVQRDTGGY AVALAASMPL IFGTQPGDTM FTASDVGWVV GHSYIVYAPL 
LAGLTTVMYE GTPIRPDGAV WWRIVEQYRV NVMFTAPTAI RVLKKQDPAL LQRHDLSSLR 
RLFLAGEPLD EPTASWIGEA LHKPIVDNYW QTETGWPMLA IPQGVEPSEQ KLGSPGFPVY 
GYKLDILDEA TGQPCAPGEK GLLAVSAPLP PGCMTTVWGD DARFLKTYWS AFPGRHIYSS 
FDWGVRDEEG YVTILGRTDD VINVAGHRLG TREIEESLSS HPAIAEVAVV GVADQLKGQV 
AMGFAIVRDA SRIAEPTGRL ALEGELMRTV EMQLGAVARP SRVFFVGALP KTRSGKLLRR 
AMQAVAEGRD PGDLTTIEDP TALAQVQAAV RGD